Advanced search
Publication Cover
Bioscience, Biotechnology, and Biochemistry Volume 76, 2012 - Issue 5
Journal homepage
638
Views
64
CrossRef citations to date
0
Altmetric
Original Articles

Differences in the Substrate Specificities and Active-Site Structures of Two α-L-Fucosidases (Glycoside Hydrolase Family 29) from Bacteroides thetaiotaomicron

Haruko SAKURAMAResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
,
Erika TSUTSUMIResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
,
Hisashi ASHIDAGraduate School of Biostudies, Kyoto University
,
Takane KATAYAMAResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
,
Kenji YAMAMOTOResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
&
Hidehiko KUMAGAIResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University
Pages 1022-1024 | Received 06 Jan 2012, Accepted 27 Jan 2012, Published online: 22 May 2014

Citations (64)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (6)

Yingying Zhu, Guocong Luo, Li Wan, Jiawei Meng, Sang Yup Lee & Wanmeng Mu. (2022) Physiological effects, biosynthesis, and derivatization of key human milk tetrasaccharides, lacto-N-tetraose, and lacto-N-neotetraose. Critical Reviews in Biotechnology 42:4, pages 578-596.
Read now
Yingying Zhu, Li Wan, Wen Li, Dawei Ni, Wenli Zhang, Xin Yan & Wanmeng Mu. (2022) Recent advances on 2′-fucosyllactose: physiological properties, applications, and production approaches. Critical Reviews in Food Science and Nutrition 62:8, pages 2083-2092.
Read now
Hasinika K. A. H. Gamage, Raymond W. W. Chong, Daniel Bucio-Noble, Liisa Kautto, Anandwardhan A. Hardikar, Malcolm S. Ball, Mark P. Molloy, Nicolle H. Packer & Ian T. Paulsen. (2020) Changes in dietary fiber intake in mice reveal associations between colonic mucin O-glycosylation and specific gut bacteria. Gut Microbes 12:1.
Read now
Yuta Sugiyama, Toshihiko Katoh, Yuji Honda, Aina Gotoh, Hisashi Ashida, Shin Kurihara, Kenji Yamamoto & Takane Katayama. (2017) Application study of 1,2-α-l-fucosynthase: introduction of Fucα1-2Gal disaccharide structures on N-glycan, ganglioside, and xyloglucan oligosaccharide. Bioscience, Biotechnology, and Biochemistry 81:2, pages 283-291.
Read now
Takane Katayama. (2016) Host-derived glycans serve as selected nutrients for the gut microbe: human milk oligosaccharides and bifidobacteria. Bioscience, Biotechnology, and Biochemistry 80:4, pages 621-632.
Read now
Md. Ziaur Rahman, Makoto Fujishige, Megumi Maeda & Yoshinobu Kimura. (2016) Rice α-fucosidase active against plant complex type N-glycans containing Lewis a epitope: purification and characterization. Bioscience, Biotechnology, and Biochemistry 80:2, pages 291-294.
Read now

Articles from other publishers (58)

Ziyu Zhang, Yuting Li, Mujunqi Wu, Zhen Gao, Bin Wu & Bingfang He. (2023) Identification and Characterization of a Novel α-L-Fucosidase from Enterococcus gallinarum and Its Application for Production of 2′-Fucosyllactose. International Journal of Molecular Sciences 24:14, pages 11555.
Crossref
Valentina N Perna, Kristian Barrett, Anne S Meyer & Birgitte Zeuner. (2023) Substrate specificity and transglycosylation capacity of α-L-fucosidases across GH29 assessed by bioinformatics-assisted selection of functional diversity. Glycobiology 33:5, pages 396-410.
Crossref
Ran Shi, Shao-qing Yang, Nan-nan Wang, Qiao-juan Yan, Xie-min Yan & Zheng-qiang Jiang. (2023) Synthesis of 2′-fucosyllactose from apple pomace–derived xyloglucan oligosaccharides by an α-L-fucosidase from Pedobacter sp. CAU209. Applied Microbiology and Biotechnology 107:11, pages 3579-3591.
Crossref
幹祥 阪中 & 高嶺 片山. (2023) Special feature【特集：オリゴ糖研究の最前線　その2】乳児期の腸内細菌叢とヒト母乳オリゴ糖：分子・菌体・菌叢レベルでの解析から見えてきたこと. Bulletin of Applied Glycoscience 12:4, pages 195-202.
Crossref
Grete Raba & Ana S. Luis. (2023) Mucin utilization by gut microbiota: recent advances on characterization of key enzymes. Essays in Biochemistry.
Crossref
Rikako Shishiuchi, Hyejin Kang, Takayoshi Tagami, Yoshitaka Ueda, Weeranuch Lang, Atsuo Kimura & Masayuki Okuyama. (2022) Discovery of α- l -Glucosidase Raises the Possibility of α- l -Glucosides in Nature . ACS Omega 7:50, pages 47411-47423.
Crossref
Xiaohua Liu, Xin Geng, Weizhi Liu & Qianqian Lyu. (2022) Biochemical characterization of an α-fucosidase PsaFuc from the GH29 family. Process Biochemistry 122, pages 258-266.
Crossref
Artem S. Silchenko, N.K. Rubtsov, A.O. Zueva, M.I. Kusaykin, A.B. Rasin & S.P. Ermakova. (2022) Fucoidan-active α-L-fucosidases of the GH29 and GH95 families from a fucoidan degrading cluster of the marine bacterium Wenyingzhuangia fucanilytica. Archives of Biochemistry and Biophysics 728, pages 109373.
Crossref
Eva M. Moya-Gonzálvez, Nazaret Peña-Gil, Antonio Rubio-del-Campo, José M. Coll-Marqués, Roberto Gozalbo-Rovira, Vicente Monedero, Jesús Rodríguez-Díaz & María J. Yebra. (2022) Infant Gut Microbial Metagenome Mining of α- l -Fucosidases with Activity on Fucosylated Human Milk Oligosaccharides and Glycoconjugates . Microbiology Spectrum 10:4.
Crossref
Terézia Koval'ová, Tomáš Kovaľ, Jan Stránský, Petr Kolenko, Jarmila Dušková, Leona Švecová, Patricie Vodičková, Vojtěch Spiwok, Eva Benešová, Petra Lipovová & Jan Dohnálek. (2022) The first structure–function study of GH151 α‐ l ‐fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity . The FEBS Journal 289:16, pages 4998-5020.
Crossref
Mikkel Schultz-Johansen, Peter Stougaard, Birte Svensson & David Teze. (2022) Characterization of five marine family 29 glycoside hydrolases reveals an α-L-fucosidase targeting specifically Fuc( α 1,4)GlcNAc . Glycobiology 32:6, pages 529-539.
Crossref
Maryse D Berkhout, Caroline M Plugge & Clara Belzer. (2022) How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding. Glycobiology 32:3, pages 182-200.
Crossref
Daniela J. Carroll, Mary W.N. Burns, Lynda Mottram, Daniel C. Propheter, Andrew Boucher, Gabrielle M. Lessen, Ashwani Kumar, Stacy A. Malaker, Chao Xing, Lora V. Hooper, Ulf Yrlid & Jennifer J. Kohler. (2022) Interleukin-22 regulates B3GNT7 expression to induce fucosylation of glycoproteins in intestinal epithelial cells. Journal of Biological Chemistry 298:2, pages 101463.
Crossref
Joel Martínez-Ocaña, Williams Arony Martínez-Flores, Angélica Olivo-Díaz, Mirza Romero-Valdovinos, Fernando Martínez-Hernández, Guillermo Aguilar-Osorio, Ana Flisser & Pablo Maravilla. (2022) Identification of α-L-fucosidase (ALFuc) of Blastocystis sp. subtypes ST1, ST2 and ST3. Revista do Instituto de Medicina Tropical de São Paulo 64.
Crossref
Latifa Chkioua, Yessine Amri, Sahli Chaima, Ferdawes Fenni, Hela Boudabous, Hadhami Ben Turkia, Taieb Messaoud, Neji Tebib & Sandrine Laradi. (2021) Fucosidosis in Tunisian patients: mutational analysis and homology-based modeling of FUCA1 enzyme. BMC Medical Genomics 14:1.
Crossref
Haley A Brown & Nicole M Koropatkin. (2021) Host glycan utilization within the Bacteroidetes Sus-like paradigm . Glycobiology 31:6, pages 697-706.
Crossref
Kristin E Low, Steven P Smith, D Wade Abbott & Alisdair B Boraston. (2021) The glycoconjugate-degrading enzymes of Clostridium perfringens : Tailored catalysts for breaching the intestinal mucus barrier . Glycobiology 31:6, pages 681-690.
Crossref
Yvette M. C. A. Luijkx, Seino Jongkees, Karin Strijbis & Tom Wennekes. (2021) Development of a 1,2-difluorofucoside activity-based probe for profiling GH29 fucosidases. Organic & Biomolecular Chemistry 19:13, pages 2968-2977.
Crossref
Nicola Curci, Andrea Strazzulli, Roberta Iacono, Federica De Lise, Luisa Maurelli, Mauro Di Fenza, Beatrice Cobucci-Ponzano & Marco Moracci. (2021) Xyloglucan Oligosaccharides Hydrolysis by Exo-Acting Glycoside Hydrolases from Hyperthermophilic Microorganism Saccharolobus solfataricus. International Journal of Molecular Sciences 22:7, pages 3325.
Crossref
Hwaseok Hong, Do Hyoung Kim, Hogyun Seo, Kyoung Heon Kim & Kyung-Jin Kim. (2021) Dual α-1,4- and β-1,4-Glycosidase Activities by the Novel Carbohydrate-Binding Module in α- l -Fucosidase from Vibrio sp. Strain EJY3 . Journal of Agricultural and Food Chemistry 69:11, pages 3380-3389.
Crossref
Wenting Zhou, Hong Jiang, Lili Wang, Xingxing Liang & Xiangzhao Mao. (2021) Biotechnological Production of 2′-Fucosyllactose: A Prevalent Fucosylated Human Milk Oligosaccharide. ACS Synthetic Biology 10:3, pages 447-458.
Crossref
Haiyang Wu, Osmond Rebello, Emmanuelle H. Crost, C. David Owen, Samuel Walpole, Chloe Bennati-Granier, Didier Ndeh, Serena Monaco, Thomas Hicks, Anna Colvile, Paulina A. Urbanowicz, Martin A. Walsh, Jesus Angulo, Daniel I. R. Spencer & Nathalie Juge. (2020) Fucosidases from the human gut symbiont Ruminococcus gnavus. Cellular and Molecular Life Sciences 78:2, pages 675-693.
Crossref
Erik H. Klontz, Chao Li, Kyle Kihn, James K. Fields, Dorothy Beckett, Greg A. Snyder, Patrick L. Wintrode, Daniel Deredge, Lai-Xi Wang & Eric J. Sundberg. (2020) Structure and dynamics of an α-fucosidase reveal a mechanism for highly efficient IgG transfucosylation. Nature Communications 11:1.
Crossref
Birgitte Zeuner, Marlene Vuillemin, Jesper Holck, Jan Muschiol & Anne S. Meyer. (2020) Improved Transglycosylation by a Xyloglucan-Active α-l-Fucosidase from Fusarium graminearum. Journal of Fungi 6:4, pages 295.
Crossref
Loo Wee Chia, Marko Mank, Bernadet Blijenberg, Steven Aalvink, Roger S. Bongers, Bernd Stahl, Jan Knol & Clara Belzer. (2020) Bacteroides thetaiotaomicron Fosters the Growth of Butyrate-Producing Anaerostipes caccae in the Presence of Lactose and Total Human Milk Carbohydrates. Microorganisms 8:10, pages 1513.
Crossref
Shuntaro Nakamura, Takatsugu Miyazaki & Enoch Y. Park. (2020) α-L-Fucosidase from Bombyx mori has broad substrate specificity and hydrolyzes core fucosylated N-glycans. Insect Biochemistry and Molecular Biology 124, pages 103427.
Crossref
Peng Liu, Huaqin Zhang, Yuying Wang, Xiaodi Chen, Lan Jin, Li Xu & Min Xiao. (2020) Screening and characterization of an α-L-fucosidase from Bacteroides fragilis NCTC9343 for synthesis of fucosyl-N-acetylglucosamine disaccharides. Applied Microbiology and Biotechnology 104:18, pages 7827-7840.
Crossref
Hendrik Grootaert, Linde Van Landuyt, Paco Hulpiau & Nico Callewaert. (2020) Functional exploration of the GH29 fucosidase family. Glycobiology 30:9, pages 735-745.
Crossref
Ran Shi, Junwen Ma, Qiaojuan Yan, Shaoqing Yang, Zhihong Fan & Zhengqiang Jiang. (2020) Biochemical characterization of a novel α-L-fucosidase from Pedobacter sp. and its application in synthesis of 3′-fucosyllactose and 2′-fucosyllactose. Applied Microbiology and Biotechnology 104:13, pages 5813-5826.
Crossref
Christine Josenhans, Johannes Müthing, Lothar Elling, Sina Bartfeld & Herbert Schmidt. (2020) How bacterial pathogens of the gastrointestinal tract use the mucosal glyco-code to harness mucus and microbiota: New ways to study an ancient bag of tricks. International Journal of Medical Microbiology 310:2, pages 151392.
Crossref
Zhen Yu & James A. Cowan. 2020. Medicinal Chemistry. Medicinal Chemistry 361 391 .
Kieran James, Francesca Bottacini, Jose Ivan Serrano Contreras, Mariane Vigoureux, Muireann Egan, Mary O’connell Motherway, Elaine Holmes & Douwe van Sinderen. (2019) Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal. Scientific Reports 9:1.
Crossref
Akiko Ono, Tomohiro Suzuki, Saki Gotoh, Haruka Kono, Megumi Matsui, Daichi Aoki, Masaru Matsuda, Hirokazu Kawagishi & Makoto Ogata. (2019) Structural investigation of α-l-fucosidase from the pancreas of Patiria pectinifera, based on molecular cloning. Carbohydrate Research 475, pages 27-33.
Crossref
Ritika Bishnoi, Sonal Mahajan & T N C Ramya. (2018) An F-type lectin domain directs the activity of Streptosporangium roseum alpha-l-fucosidase. Glycobiology 28:11, pages 860-875.
Crossref
Natalia N Perrella, Stephen G Withers & Adriana R Lopes. (2018) Identity and role of the non-conserved acid/base catalytic residue in the GH29 fucosidase from the spider Nephilingis cruentata. Glycobiology.
Crossref
Birgitte Zeuner, Marlene Vuillemin, Jesper Holck, Jan Muschiol & Anne S. Meyer. (2018) Loop engineering of an α-1,3/4-l-fucosidase for improved synthesis of human milk oligosaccharides. Enzyme and Microbial Technology 115, pages 37-44.
Crossref
Md. Ziaur Rahman, Yuta Tsujimori, Megumi Maeda, Md. Anowar Hossain, Takeshi Ishimizu & Yoshinobu Kimura. (2018) Molecular characterization of second tomato α1,3/4-fucosidase (α-Fuc’ase Sl-2), a member of glycosyl hydrolase family 29 active toward the core α1,3-fucosyl residue in plant N-glycans. The Journal of Biochemistry 164:1, pages 53-63.
Crossref
Birgitte Zeuner, Jan Muschiol, Jesper Holck, Mateusz Lezyk, Mattias Raae Gedde, Carsten Jers, Jørn Dalgaard Mikkelsen & Anne S. Meyer. (2018) Substrate specificity and transfucosylation activity of GH29 α-l-fucosidases for enzymatic production of human milk oligosaccharides. New Biotechnology 41, pages 34-45.
Crossref
Shun Kato, Megumi Hayashi, Mai Kitagawa, Hiroyuki Kajiura, Megumi Maeda, Yoshinobu Kimura, Kiyohiko Igarashi, Masahiro Kasahara & Takeshi Ishimizu. (2018) Degradation pathway of plant complex-type N -glycans: identification and characterization of a key α1,3-fucosidase from glycoside hydrolase family 29 . Biochemical Journal 475:1, pages 305-317.
Crossref
Tiansheng Li, Mengjie Li, Linlin Hou, Yameng Guo, Lei Wang, Guiqin Sun & Li Chen. (2018) Identification and characterization of a core fucosidase from the bacterium Elizabethkingia meningoseptica. Journal of Biological Chemistry 293:4, pages 1243-1258.
Crossref
Chao Li, Shilei Zhu, Christopher Ma & Lai-Xi Wang. (2017) Designer α1,6-Fucosidase Mutants Enable Direct Core Fucosylation of Intact N-Glycopeptides and N-Glycoproteins. Journal of the American Chemical Society 139:42, pages 15074-15087.
Crossref
Zhen Yu & James Allan Cowan. (2017) Design of Artificial Glycosidases: Metallopeptides that Remove H Antigen from Human Erythrocytes. Angewandte Chemie International Edition 56:10, pages 2763-2766.
Crossref
Zhen Yu & James Allan Cowan. (2017) Design of Artificial Glycosidases: Metallopeptides that Remove H Antigen from Human Erythrocytes. Angewandte Chemie 129:10, pages 2807-2810.
Crossref
Tsung-I Tsai, Shiou-Ting Li, Chiu-Ping Liu, Karen Y. Chen, Sachin S. Shivatare, Chin-Wei Lin, Shih-Fen Liao, Chih-Wei Lin, Tsui-Ling Hsu, Ying-Ta Wu, Ming-Hung Tsai, Meng-Yu Lai, Nan-Horng Lin, Chung-Yi Wu & Chi-Huey Wong. (2016) An Effective Bacterial Fucosidase for Glycoprotein Remodeling. ACS Chemical Biology 12:1, pages 63-72.
Crossref
Shujun Dong, Yaoguang Chang, Jingjing Shen, Changhu Xue & Feng Chen. (2017) Purification, expression and characterization of a novel α- l -fucosidase from a marine bacteria Wenyingzhuangia fucanilytica. Protein Expression and Purification 129, pages 9-17.
Crossref
Svetlana V. Shvetsova, Konstantin A. Shabalin, Kirill S. Bobrov, Dina R. Ivanen, Nadezhda E. Ustyuzhanina, Vadim B. Krylov, Nikolay E. Nifantiev, Stanislav N. Naryzhny, Victor G. Zgoda, Elena V. Eneyskaya & Anna A. Kulminskaya. (2017) Characterization of a new α-l-fucosidase isolated from Fusarium proliferatum LE1 that is regioselective to α-(1 → 4)-l-fucosidic linkage in the hydrolysis of α-l-fucobiosides. Biochimie 132, pages 54-65.
Crossref
Md. Ziaur Rahman, Megumi Maeda, Satsuki Itano, Anowar Hossain, Takeshi Ishimizu & Yoshinobu Kimura. (2016) Molecular characterization of tomato α1,3/4-fucosidase, a member of glycosyl hydrolase family 29 involved in the degradation of plant complex type N -glycans . Journal of Biochemistry, pages mvw089.
Crossref
Shuquan Fan, Huaqin Zhang, Xiaodi Chen, Lili Lu, Li Xu & Min Xiao. (2016) Cloning, characterization, and production of three α- l -fucosidases from Clostridium perfringens ATCC 13124 . Journal of Basic Microbiology 56:4, pages 347-357.
Crossref
Mateusz Lezyk, Carsten Jers, Louise Kjaerulff, Charlotte H. Gotfredsen, Maria D. Mikkelsen & Jørn D. Mikkelsen. (2016) Novel α-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides. PLOS ONE 11:1, pages e0147438.
Crossref
Arnold E. Stütz & Tanja M. Wrodnigg. 2016. 225 302 .
Takatsugu Miyazaki, Yuichi Ishizaki, Megumi Ichikawa, Atsushi Nishikawa & Takashi Tonozuka. (2015) Structural and biochemical characterization of novel bacterial α-galactosidases belonging to glycoside hydrolase family 31. Biochemical Journal 469:1, pages 145-158.
Crossref
Jimmy E. Becerra, María J. Yebra & Vicente Monedero. (2015) An l -Fucose Operon in the Probiotic Lactobacillus rhamnosus GG Is Involved in Adaptation to Gastrointestinal Conditions . Applied and Environmental Microbiology 81:11, pages 3880-3888.
Crossref
Louise E. Tailford, Emmanuelle H. Crost, Devon Kavanaugh & Nathalie Juge. (2015) Mucin glycan foraging in the human gut microbiome. Frontiers in Genetics 6.
Crossref
Audrey Hottin, Daniel W. Wright, Gideon J. Davies & Jean-Bernard Behr. (2015) Exploiting the Hydrophobic Terrain in Fucosidases with Aryl-Substituted Pyrrolidine Iminosugars. ChemBioChem 16:2, pages 277-283.
Crossref
Takane Katayama. (2014) Special feature【特集：乳に係わる糖鎖研究の最前線】　ビフィズス菌とヒトミルクオリゴ糖. Bulletin of Applied Glycoscience 4:4, pages 287-294.
Crossref
Hongnan Cao, Jonathan D. Walton, Phil Brumm & George N. PhillipsJr.Jr.. (2014) Structure and Substrate Specificity of a Eukaryotic Fucosidase from Fusarium graminearum. Journal of Biological Chemistry 289:37, pages 25624-25638.
Crossref
Laure Guillotin, Pierre Lafite & Richard Daniellou. (2014) Unraveling the Substrate Recognition Mechanism and Specificity of the Unusual Glycosyl Hydrolase Family 29 BT2192 from Bacteroides thetaiotaomicron . Biochemistry 53:9, pages 1447-1455.
Crossref
F. Aidha Shaikh, Alicia Lammerts van BuerenGideon J. DaviesStephen G. Withers. (2013) Identifying the Catalytic Acid/Base in GH29 α- l -Fucosidase Subfamilies . Biochemistry 52:34, pages 5857-5864.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.