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Ontology-supported research on vaccine efficacy, safety and integrative biological networks

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Nagendra R. Hegde, S. Gauthami, H. M. Sampath Kumar & Jagadeesh Bayry. (2018) The use of databases, data mining and immunoinformatics in vaccinology: where are we?. Expert Opinion on Drug Discovery 13:2, pages 117-130.
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Anthony Huffman, Edison Ong, Junguk Hur, Adonis D’Mello, Hervé Tettelin & Yongqun He. (2022) COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning. Briefings in Bioinformatics 23:4.
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Wenxin Guo, Jessica Deguise, Yujia Tian, Philip Chi-En Huang, Rohit Goru, Qiuyue Yang, Suyuan Peng, Luxia Zhang, Lili Zhao, Jiangan Xie & Yongqun He. (2022) Profiling COVID-19 Vaccine Adverse Events by Statistical and Ontological Analysis of VAERS Case Reports. Frontiers in Pharmacology 13.
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Jiangan Xie, Wenrui Zi, Zhangyong Li & Yongqun He. (2021) Ontology-based Precision Vaccinology for Deep Mechanism Understanding and Precision Vaccine Development. Current Pharmaceutical Design 27:7, pages 900-910.
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Riccardo L. Rossi & Renata M. Grifantini. (2018) Big Data: Challenge and Opportunity for Translational and Industrial Research in Healthcare. Frontiers in Digital Humanities 5.
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Jiangan Xie & Yongqun He. 2017. Healthcare and Big Data Management. Healthcare and Big Data Management 89 103 .
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu & Yongqun He. (2016) Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events. Journal of Biomedical Semantics 7:1.
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Jiangan Xie, Christopher Codd, Kevin Mo & Yongqun He. (2016) Differential Adverse Event Profiles Associated with BCG as a Preventive Tuberculosis Vaccine or Therapeutic Bladder Cancer Vaccine Identified by Comparative Ontology-Based VAERS and Literature Meta-Analysis. PLOS ONE 11:10, pages e0164792.
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Yongqun He. (2016) Ontology-Based Vaccine and Drug Adverse Event Representation and Theory-Guided Systematic Causal Network Analysis Toward Integrative Pharmacovigilance Research. Current Pharmacology Reports 2:3, pages 113-128.
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Shunzhou Deng, Carly Martin, Rasika Patil, Felix Zhu, Bin Zhao, Zuoshuang Xiang & Yongqun He. (2015) Vaxvec: The first web-based recombinant vaccine vector database and its data analysis. Vaccine 33:48, pages 6938-6946.
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