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Review

Putting proteomics on target: activity-based profiling of ubiquitin and ubiquitin-like processing enzymes

Pages 213-221 | Published online: 09 Jan 2014

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Kui Wang, Tao Yang, Qian Wu, Xia Zhao, Edouard Collins Nice & Canhua Huang. (2012) Chemistry-based functional proteomics for drug target deconvolution. Expert Review of Proteomics 9:3, pages 293-310.
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Yara Huppelschoten, Jens Buchardt, Thomas E. Nielsen, Aysegul Sapmaz & Gerbrand J. van der Heden van Noort. (2023) Total Chemical Synthesis of LC3A and LC3B Activity-Based Probes. Biomedicines 11:3, pages 884.
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Bindu Nanduri, Leslie A. Shack, John Santelices & Mariola J. Edelmann. 2023. Deubiquitinases. Deubiquitinases 45 57 .
Bindu Nanduri, Cathy R. Gresham, Gary Jones, Richard H. Bailey & Mariola J. Edelmann. (2021) Identification of active deubiquitinases in the chicken tissues. PROTEOMICS 22:1-2, pages 2100122.
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Bindu Nanduri, Cathy R. Gresham, Winnie W. Hui, Mark Ou, Richard H. Bailey & Mariola J. Edelmann. (2020) An atlas of the catalytically active liver and spleen kinases in chicken identified by chemoproteomics. Journal of Proteomics 225, pages 103850.
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Dharjath S. Hameed, Aysegul Sapmaz, Lindsey Burggraaff, Alessia Amore, Cornelis J. Slingerland, Gerard J. P. Westen & Huib Ovaa. (2019) Development of Ubiquitin‐Based Probe for Metalloprotease Deubiquitinases. Angewandte Chemie International Edition 58:41, pages 14477-14482.
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Dharjath S. Hameed, Aysegul Sapmaz, Lindsey Burggraaff, Alessia Amore, Cornelis J. Slingerland, Gerard J. P. Westen & Huib Ovaa. (2019) Development of Ubiquitin‐Based Probe for Metalloprotease Deubiquitinases. Angewandte Chemie 131:41, pages 14619-14624.
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Dharjath S. Hameed, Aysegul Sapmaz, Lorina Gjonaj, Remco Merkx & Huib Ovaa. (2018) Enhanced Delivery of Synthetic Labelled Ubiquitin into Live Cells by Using Next‐Generation Ub–TAT Conjugates. ChemBioChem 19:24, pages 2553-2557.
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Dharjath S. Hameed, Aysegul Sapmaz & Huib Ovaa. (2016) How Chemical Synthesis of Ubiquitin Conjugates Helps To Understand Ubiquitin Signal Transduction. Bioconjugate Chemistry 28:3, pages 805-815.
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Holger B. Kramer, Benjamin Nicholson, Benedikt M. Kessler & Mikael Altun. (2012) Detection of ubiquitin–proteasome enzymatic activities in cells: Application of activity-based probes to inhibitor development. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1823:11, pages 2029-2037.
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Mariola J. Edelmann & Benedikt M. Kessler. (2008) Ubiquitin and ubiquitin-like specific proteases targeted by infectious pathogens: Emerging patterns and molecular principles. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1782:12, pages 809-816.
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Jun Min Peng. (2008) Evaluation of proteomic strategies for analyzing ubiquitinated proteins. BMB Reports 41:3, pages 177-183.
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Mahesh Uttamchandani, Junqi Li, Hongyan Sun & Shao Q. Yao. (2008) Activity-Based Protein Profiling: New Developments and Directions in Functional Proteomics. ChemBioChem 9:5, pages 667-675.
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