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Fleur Hammet, Khalid Mahmood, Thomas R Green, Tu Nguyen-Dumont, Melissa C Southey, Daniel D Buchanan, Andrew Lonie, Katherine L Nathanson, Fergus J Couch, Bernard J Pope & Daniel J Park. (2019) Hi-Plex2: A Simple and Robust Approach to Targeted Sequencing-Based Genetic Screening. BioTechniques 67:3, pages 118-122.
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Articles from other publishers (43)
João P. Ascari, Luis I. Cazón, Mostafa Rahnama, Kurt LamourJosé M. C. Fernandes, Mark L. Farman & Emerson M. Del Ponte. (2024)
Pyricularia
Are Mostly Host-Specialized with Limited Reciprocal Cross-Infection Between Wheat and Endemic Grasses in Minas Gerais, Brazil
. Phytopathology® 114:1, pages 226-240.
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Kedra Ousmael, Ross W. Whetten, Jing Xu, Ulrik B. Nielsen, Kurt Lamour & Ole K. Hansen. (2023) Identification and high-throughput genotyping of single nucleotide polymorphism markers in a non-model conifer (Abies nordmanniana (Steven) Spach). Scientific Reports 13:1.
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Peter Tandy, Kurt Lamour, Caroline Placidi de Bortoli, Rodney Nagoshi, Scott J Emrich & Juan Luis Jurat-Fuentes. (2023)
Screening for resistance alleles to Cry1 proteins through targeted sequencing in the native and invasive range of
Spodoptera frugiperda
(Lepidoptera: Noctuidae)
. Journal of Economic Entomology 116:3, pages 935-944.
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Silas Shumate, Maggie Haylett, Brenda Nelson, Nicole Young, Kurt Lamour, Doug Walsh, Benjamin Bradford & Justin Clements. (2023) Using targeted sequencing and TaqMan approaches to detect acaricide (bifenthrin, bifenazate, and etoxazole) resistance associated SNPs in Tetranychus urticae collected from peppermint fields and hop yards. PLOS ONE 18:3, pages e0283211.
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Larissa Carvalho Costa, Benjamin AthaIIIIII, Xiaojun Hu, Kurt Lamour, Yu Yang, Mary O’Connell, Clint McFarland, Joseph A. Foster & Oscar P. Hurtado-Gonzales. (2022) High-throughput detection of a large set of viruses and viroids of pome and stone fruit trees by multiplex PCR-based amplicon sequencing. Frontiers in Plant Science 13.
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Sanjib Sapkota, Rishi R. Burlakoti, Kurt Lamour, Mark Lubberts & Zamir K. Punja. (2022) Development and application of multiplex targeted-sequencing approaches to identify Phytophthora species associated with root rot and wilting complex of red raspberry. PLOS ONE 17:11, pages e0275384.
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Justin Clements, Maggie Haylett, Brenda Nelson, Silas Shumate, Nicole Young, Benjamin Bradford, Doug Walsh & Kurt Lamour. (2022) Multiplex Polymerase Chain Reaction Reveals Unique Trends in Pathogen and Parasitoid Infestations of Alfalfa Leafcutting Brood Cells. Journal of Insect Science 22:4.
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Cullen M. Shaffer, David C. Michener, Nastassia B. Vlasava, Henry Chotkowski, Kurt Lamour, Daisy Stainton & Ioannis E. Tzanetakis. (2021) The population structure of the secovirid lychnis mottle virus based on the RNA2 coding sequences. Virus Research 303, pages 198468.
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Tristan V. de Jong, Panjun Kim, Victor Guryev, Megan K. Mulligan, Robert W. Williams, Eva E. Redei & Hao Chen. (2021) Whole genome sequencing of nearly isogenic WMI and WLI inbred rats identifies genes potentially involved in depression and stress reactivity. Scientific Reports 11:1.
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Katrina Schlum, Kurt Lamour, Peter Tandy, Scott J. Emrich, Caroline Placidi de Bortoli, Tejas Rao, Diego M. Viteri Dillon, Angela M. Linares-Ramirez & Juan Luis Jurat-Fuentes. (2021) Genetic Screening to Identify Candidate Resistance Alleles to Cry1F Corn in Fall Armyworm Using Targeted Sequencing. Insects 12:7, pages 618.
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Justin Clements, Kurt Lamour, Kenneth Frost, James Dwyer, Anders Huseth & Russell L Groves. (2021)
Targeted
RNA
sequencing reveals differential patterns of transcript expression in geographically discrete, insecticide resistant populations of
Leptinotarsa decemlineata
. Pest Management Science 77:7, pages 3436-3444.
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Berit Samils, Björn Andersson, Eva Edin, Malin Elfstrand, Tilman Rönneburg, Diana Bucur, Fiona Hutton, Thies M. Heick, Pierre Hellin & Steven Kildea. (2021) Development of a PacBio Long-Read Sequencing Assay for High Throughput Detection of Fungicide Resistance in Zymoseptoria tritici. Frontiers in Microbiology 12.
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Rajiv Chaudhary, Tilman Rönneburg, Matilda Stein Åslund, Karl Lundén, Mikael Brandström Durling, Katarina Ihrmark, Audrius Menkis, Lars-Göran Stener, Malin Elfstrand, Michelle Cleary & Jan Stenlid. (2020) Marker-Trait Associations for Tolerance to Ash Dieback in Common Ash (Fraxinus excelsior L.). Forests 11:10, pages 1083.
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Ole K. Hansen, Kurt Lamour, Ross Whetten, Jing Xu, Argelia Cuenca, Md. Shofiqul Islam & Ulrik Braüner Nielsen. (2020) Ad hoc breeding of a genetically depauperate landrace of noble
fir (Abies procera Rehder) using SNP genotyping via
high-throughput targeted sequencing. Tree Genetics & Genomes 16:5.
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R. Mihelic, H. Winter, J. B. Powers, S. Das, K. Lamour, S. R. Campagna & B. H. Voy. (2020) Genes controlling polyunsaturated fatty acid synthesis are developmentally regulated in broiler chicks. British Poultry Science 61:5, pages 508-517.
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Xinyao Miao, Bowen Li, Yuesheng Shen, Huiyun Yu, Guoqiang Zhu, Chen Liang, Xiao Fu, Chu Wang, Shengbin Li & Bao Zhang. (2020) Development and Verification of an Economical Method of Custom Target Library Construction. ACS Omega 5:22, pages 13087-13095.
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Asimina Katsiani, Daisy Stainton, Kurt Lamour & Ioannis E. Tzanetakis. (2020) The population structure of Rose rosette virus in the USA. Journal of General Virology 101:6, pages 676-684.
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Wei Xiong Wen, Adam J. Mead & Supat Thongjuea. (2020) Technological advances and computational approaches for alternative splicing analysis in single cells. Computational and Structural Biotechnology Journal 18, pages 332-343.
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A. A. Kechin, M. A. Dymova, A. A. Tishkin, S. P. Grushin, P. K. Dashkovskiy & M. L. Filipenko. (2020) Targeted Sequencing for Studying Economically Useful Traits and Phylogenetic Diversity of Ancient Sheep. Russian Journal of Genetics 55:12, pages 1499-1505.
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Judith E. Grolleman, Richarda M. de Voer, Fadwa A. Elsayed, Maartje Nielsen, Robbert D.A. Weren, Claire Palles, Marjolijn J.L. Ligtenberg, Janet R. Vos, Sanne W. ten Broeke, Noel F.C.C. de Miranda, Renske A. Kuiper, Eveline J. Kamping, Erik A.M. Jansen, M. Elisa Vink-Börger, Isabell Popp, Alois Lang, Isabel Spier, Robert Hüneburg, Paul A. James, Na Li, Marija Staninova, Helen Lindsay, David Cockburn, Olivera Spasic-Boskovic, Mark Clendenning, Kevin Sweet, Gabriel Capellá, Wenche Sjursen, Hildegunn Høberg-Vetti, Marjolijn C. Jongmans, Kornelia Neveling, Ad Geurts van Kessel, Hans Morreau, Frederik J. Hes, Rolf H. Sijmons, Hans K. Schackert, Clara Ruiz-Ponte, Dagmara Dymerska, Jan Lubinski, Barbara Rivera, William D. Foulkes, Ian P. Tomlinson, Laura Valle, Daniel. D. Buchanan, Sue Kenwrick, Julian Adlard, Aleksandar J. Dimovski, Ian G. Campbell, Stefan Aretz, Detlev Schindler, Tom van Wezel, Nicoline Hoogerbrugge & Roland P. Kuiper. (2019) Mutational Signature Analysis Reveals NTHL1 Deficiency to Cause a Multi-tumor Phenotype. Cancer Cell 35:2, pages 256-266.e5.
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Mohamed Alburaki, Shahid Karim, Kurt Lamour, John Adamczyk & Scott D. Stewart. (2019) RNA-seq reveals disruption in honey bee gene regulation when caged and deprived of hive conditions. Journal of Experimental Biology.
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Andrey Kechin, Evgeniy Khrapov, Uljana Boyarskikh, Alexander Kel & Maxim Filipenko. (2018) BRCA-analyzer: Automatic workflow for processing NGS reads of BRCA1 and BRCA2 genes. Computational Biology and Chemistry 77, pages 297-306.
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A. A. Kechin, U. A. Boyarskikh, N. A. Ermolenko, A. S. Tyulyandina, D. G. Lazareva, A. M. Avdalyan, S. A. Tyulyandin, N. E. Kushlinskii & M. L. Filipenko. (2018) Loss of Heterozygosity in BRCA1 and BRCA2 Genes in Patients with Ovarian Cancer and Probability of Its Use for Clinical Classification of Variations. Bulletin of Experimental Biology and Medicine 165:1, pages 94-100.
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Bernard J. Pope, Fleur Hammet, Tu Nguyen-Dumont & Daniel J. Park. 2018. Next Generation Sequencing. Next Generation Sequencing
53
70
.
Andrey KechinUljana BoyarskikhAlexander KelMaxim Filipenko. (2017) cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing. Journal of Computational Biology 24:11, pages 1138-1143.
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Derek W. Barchenger, Kurt H. Lamour, Zong-Ming Sheu, Sandesh Shrestha, Sanjeet Kumar, Shih-Wen Lin, Rishi Burlakoti & Paul W. Bosland. (2017) Intra- and Intergenomic variation of Ploidy and Clonality characterize Phytophthora capsici on Capsicum sp. in Taiwan. Mycological Progress 16:10, pages 955-963.
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Sandesh K. Shrestha, Kurt Lamour & Heather Young-Kelly. (2017) Genome sequences and SNP analyses of Corynespora cassiicola from cotton and soybean in the southeastern United States reveal limited diversity. PLOS ONE 12:9, pages e0184908.
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Maryam Mahmoodi, Tu Nguyen-Dumont, Fleur Hammet, Bernard J. Pope, Daniel J. Park, Melissa C. Southey, John M. Darlow, Fiona Bruinsma & Ingrid Winship. (2017) Mutation screening of ACKR3 and COPS8 in kidney cancer cases from the CONFIRM study. Familial Cancer 16:3, pages 411-416.
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Ke Chen, Yuxun Zhou, Kai Li & Junhua Xiao. (2018) Multiplex PCR with the blunt hairpin primers for next generation sequencing. Biotechnology and Bioprocess Engineering 22:3, pages 347-351.
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Sandesh Kumar Shrestha, Alicia Cochran, Alemu Mengistu, Kurt Lamour, Arturo Castro-Rocha & Heather Young-Kelly. (2017) Genetic diversity, QoI fungicide resistance, and mating type distribution of Cercospora sojina—Implications for the disease dynamics of frogeye leaf spot on soybean. PLOS ONE 12:5, pages e0177220.
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Naomi Park & George Vassiliou. 2017. Acute Myeloid Leukemia. Acute Myeloid Leukemia
87
99
.
Jean Berthier, Kenneth A. Brakke & Erwin Berthier. 2016. Open Microfluidics. Open Microfluidics
1
11
.
Ke Chen, Yu-xun Zhou, Kai Li, Li-xin Qi, Qi-fei Zhang, Mao-chun Wang & Jun-hua Xiao. (2016) A novel three-round multiplex PCR for SNP genotyping with next generation sequencing. Analytical and Bioanalytical Chemistry 408:16, pages 4371-4377.
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Hanis Nazihah Hasmad, Kah Nyin Lai, Wei Xiong Wen, Daniel Jonathan Park, Tú Nguyen-Dumont, Peter Choon Eng Kang, Eswary Thirthagiri, Mahirah Ma'som, Boon Kiong Lim, Melissa Southey, Yin Ling Woo & Soo-Hwang Teo. (2016) Evaluation of germline BRCA1 and BRCA2 mutations in a multi-ethnic Asian cohort of ovarian cancer patients. Gynecologic Oncology 141:2, pages 318-322.
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Jason C. Klein, Marc J. Lajoie, Jerrod J. Schwartz, Eva-Maria Strauch, Jorgen Nelson, David Baker & Jay Shendure. (2016) Multiplex pairwise assembly of array-derived DNA oligonucleotides. Nucleic Acids Research 44:5, pages e43-e43.
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Thomas McKerrell, Naomi Park, Thaidy Moreno, Carolyn S. Grove, Hannes Ponstingl, Jonathan Stephens, Charles Crawley, Jenny Craig, Mike A. Scott, Clare Hodkinson, Joanna Baxter, Roland Rad, Duncan R. Forsyth, Michael A. Quail, Eleftheria Zeggini, Willem Ouwehand, Ignacio Varela & George S. Vassiliou. (2015) Leukemia-Associated Somatic Mutations Drive Distinct Patterns of Age-Related Clonal Hemopoiesis. Cell Reports 10:8, pages 1239-1245.
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T. Nguyen-Dumont, M. Mahmoodi, F. Hammet, T. Tran, H. Tsimiklis, G.G. Giles, J.L. Hopper, M.C. Southey & D.J. Park. (2015) Hi-Plex targeted sequencing is effective using DNA derived from archival dried blood spots. Analytical Biochemistry 470, pages 48-51.
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Tú Nguyen-Dumont, Fleur Hammet, Maryam Mahmoodi, Bernard J. Pope, Graham G. Giles, Graham G. Hopper, Melissa C. Southey & Daniel J. Park. (2015) Abridged adapter primers increase the target scope of Hi-Plex. BioTechniques 58:1, pages 33-36.
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Tú Nguyen-Dumont, Fleur Hammet, Maryam Mahmoodi, Helen Tsimiklis, Zhi L. Teo, Roger Li, Bernard J. Pope, Mary Beth Terry, Saundra S. Buys, Mary Daly, John L. Hopper, Ingrid Winship, David E. Goldgar, Daniel J. Park & Melissa C. Southey. (2015) Mutation screening of PALB2 in clinically ascertained families from the Breast Cancer Family Registry. Breast Cancer Research and Treatment 149:2, pages 547-554.
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Bernard J Pope, Tú Nguyen-Dumont, Fleur Hammet & Daniel J Park. (2014) ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets. Source Code for Biology and Medicine 9:1.
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Tú Nguyen-Dumont, Zhi L Teo, Bernard J Pope, Fleur Hammet, Maryam Mahmoodi, Helen Tsimiklis, Nelly Sabbaghian, Marc Tischkowitz, William D Foulkes, Graham G Giles, John L Hopper, Melissa C Southey & Daniel J Park. (2013) Hi-Plex for high-throughput mutation screening: application to the breast cancer susceptibility gene PALB2. BMC Medical Genomics 6:1.
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Tú Nguyen-Dumont, Bernard J. Pope, Fleur Hammet, Maryam Mahmoodi, Helen Tsimiklis, Melissa C. Southey & Daniel J. Park. (2013) Cross-platform compatibility of Hi-Plex, a streamlined approach for targeted massively parallel sequencing. Analytical Biochemistry 442:2, pages 127-129.
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Judith E. Grolleman, Richarda M. de Voer, Fadwa A. Elsayed, Maartje Nielsen, Robbert D. A. Weren, Claire Palles, Marjolijn J. L. Ligtenberg, Janet R. Vos, Sanne W. ten Broeke, Noel F. C. C. de Miranda, Renske A. Kuiper, Eveline J. Kamping, Erik A. M. Jansen, M. Elisa Vink-BBrger, Isabell Popp, Alois Lang, Isabel Spier, Robert HHneburg, Paul A. James, Na Li, Marija Staninova, Helen Lindsay, David Cockburn, Olivera Spasic-Boskovic, Mark Clendenning, Kevin Sweet, Gabriel Capelll, Wenche Sjursen, Hildegunn HHberg-Vetti, Marjolijn C. Jongmans, Kornelia Neveling, Ad Geurts van Kessel, Hans Morreau, Frederik J. Hes, Rolf H. Sijmons, Hans K. Schackert, Clara Ruiz-Ponte, Dagmara Dymerska, Jan Lubinski, Barbara Rivera, William D. Foulkes, Ian P. Tomlinson, Laura Valle, Daniel. D. Buchanan, Sue Kenwrick, Julian Adlard, Aleksandar J. Dimovski, Ian G. Campbell, Stefan Aretz, Detlev Schindler, Tom van Wezel, Nicoline Hoogerbrugge & Roland Kuiper. (2018) Mutational Signature Analysis Reveals NTHL1 Deficiency to Cause a Multi-Tumor Phenotype Including a Predisposition to Colon and Breast Cancer. SSRN Electronic Journal.
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