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Infection and Drug Resistance Volume 13, 2020 - Issue
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Original Research

Hybrid Genome Assembly and Annotation of a Pandrug-Resistant Klebsiella pneumoniae Strain Using Nanopore and Illumina Sequencing

Zhi Ruan1 Department of Clinical Laboratory, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou310016, People’s Republic of ChinaORCID Iconhttps://orcid.org/0000-0001-8648-4592
ORCID Icon,
Jianyong Wu2 Department of Clinical Laboratory, The Fourth Affiliated Hospital, Zhejiang University School of Medicine, Yiwu322000, People’s Republic of China
,
Hangfei Chen1 Department of Clinical Laboratory, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou310016, People’s Republic of China
,
Mohamed S Draz3 Department of Medicine, Harvard Medical School, Boston, MA02115, USA;4 Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA02138, USA
,
Juan Xu5 Institute of Hygiene, Zhejiang Academy of Medical Sciences, Hangzhou310013, People’s Republic of China
&
Fang He6 Department of Clinical Laboratory, Zhejiang Provincial People’s Hospital, People’s Hospital of Hangzhou Medical College, Hangzhou310014, People’s Republic of ChinaCorrespondence[email protected]
Pages 199-206 | Published online: 21 Jan 2020

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Long Sun, Juan Xu, Weizhong Wang & Fang He. (2020) Emergence of vanA-Type Vancomycin-Resistant Enterococcus faecium ST 78 Strain with a rep2-Type Plasmid Carrying a Tn1546-Like Element Isolated from a Urinary Tract Infection in China. Infection and Drug Resistance 13, pages 949-955.
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Juan Xu, Wenping Lin, Yanmin Chen & Fang He. (2020) Characterization of an IMP-4-Producing Klebsiella pneumoniae ST1873 Strain Recovered from an Infant with a Bloodstream Infection in China. Infection and Drug Resistance 13, pages 773-779.
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Articles from other publishers (10)

Jayasundara Mudiyanselage Sajani Nisansala Rathnapala, Wafaa Ragab, Satoshi Kawato, Miho Furukawa, Reiko Nozaki, Hidehiro Kondo & Ikuo Hirono. (2023) Genomic characterization and identification of virulence‐related genes in Vibrio nigripulchritudo isolated from white leg shrimp Penaeus vannamei . Journal of Fish Diseases 46:7, pages 779-790.
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Inês Carvalho Leonardo, Maria Teresa Barreto Crespo & Frédéric Bustos Gaspar. (2022) Unveiling the complete genome sequence of Alicyclobacillus acidoterrestris DSM 3922T, a taint-producing strain . G3 Genes|Genomes|Genetics 12:12.
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Dan Wang, Yicheng Wang, Xinyue Lv, Xunchao Cai, Waheed Iqbal, Bo Yang, Dan Zhou, Christopher Rensing & Yanping Mao. (2022) Isolation of Anaerobic Bromate-Reducing Bacteria Using Different Carbon Sources and Transcriptomic Insights From Klebsiella variicola Glu3. Frontiers in Microbiology 13.
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Yuanyuan Bai, Chunhong Shao, Yingying Hao, Yueling Wang & Yan Jin. (2021) Using Whole Genome Sequencing to Trace, Control and Characterize a Hospital Infection of IMP-4-Producing Klebsiella pneumoniae ST2253 in a Neonatal Unit in a Tertiary Hospital, China. Frontiers in Public Health 9.
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Abdolrahman Khezri, Ekaterina Avershina & Rafi Ahmad. (2021) Hybrid Assembly Provides Improved Resolution of Plasmids, Antimicrobial Resistance Genes, and Virulence Factors in Escherichia coli and Klebsiella pneumoniae Clinical Isolates. Microorganisms 9:12, pages 2560.
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Yingying Kong, Qingyang Sun, Hangfei Chen, Mohamed S. Draz, Xinyou Xie, Jun Zhang & Zhi Ruan. (2021) Transmission Dynamics of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 Strains Carrying Capsular Loci KL64 and rmpA/rmpA2 Genes. Frontiers in Microbiology 12.
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Ozioma Forstinus Nwabor, Pawarisa Terbtothakun, Supayang P. Voravuthikunchai & Sarunyou Chusri. (2021) A Bibliometric Meta-Analysis of Colistin Resistance in Klebsiella pneumoniae. Diseases 9:2, pages 44.
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Zhao Chen, David L. Erickson & Jianghong Meng. (2020) Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing. BMC Genomics 21:1.
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XiaoTuan Zhang, JingLin Ouyang, WenWen He, Tong Zeng, Bin Liu, Hongtao Jiang, Yunsheng Zhang, Linlin Zhou, Haijian Zhou, Zhuoran Liu & Logen Liu. (2020) Co-occurrence of Rapid Gene Gain and Loss in an Interhospital Outbreak of Carbapenem-Resistant Hypervirulent ST11-K64 Klebsiella pneumoniae. Frontiers in Microbiology 11.
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Juan Xu, Wenping Lin, Yanmin Chen & Fang He. (2020) Genomic and phylogenetic analysis of a community-acquired extended-spectrum β-lactamase-producing Escherichia coli ST429 strain recovered from a urinary tract infection. Journal of Global Antimicrobial Resistance 22, pages 656-658.
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