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Advances and Applications in Bioinformatics and Chemistry Volume 1, 2008 - Issue

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Original Research

Discrimination between biological interfaces and crystal-packing contacts

Yuko Tsuchiya1 Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo, 108-8639, JapanCorrespondence[email protected]

Haruki Nakamura2 Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan

Kengo Kinoshita1 Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo, 108-8639, Japan;3 Bioinformatics Research and Development, JST, 4-1-8 Honcho, Kawaguchi, Saitama, 332-0012, Japan

Pages 99-113 | Published online: 02 Nov 2008

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Citations (7)

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Articles from other publishers (7)

Sucharita Dey, Jaime Prilusky & Emmanuel D. Levy. (2022) QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure. Frontiers in Molecular Biosciences 8.
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Aljaž Gaber & Miha Pavšič. (2021) Modeling and Structure Determination of Homo-Oligomeric Proteins: An Overview of Challenges and Current Approaches. International Journal of Molecular Sciences 22:16, pages 9081.
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Katarina Elez, Alexandre M. J. J. Bonvin & Anna Vangone. (2020) Biological vs. Crystallographic Protein Interfaces: An Overview of Computational Approaches for Their Classification. Crystals 10:2, pages 114.
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Andrew Norris, Florian Busch, Michael Schupfner, Reinhard Sterner & Vicki H. Wysocki. (2020) Quaternary Structure of the Tryptophan Synthase α-Subunit Homolog BX1 from Zea mays . Journal of the American Society for Mass Spectrometry 31:2, pages 227-233.
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Yoshinori Fukasawa & Kentaro Tomii. (2019) Accurate Classification of Biological and non-Biological Interfaces in Protein Crystal Structures using Subtle Covariation Signals. Scientific Reports 9:1.
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Ashutosh Srivastava, Tetsuro Nagai, Arpita Srivastava, Osamu Miyashita & Florence Tama. (2018) Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics. International Journal of Molecular Sciences 19:11, pages 3401.
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Kyungtae Kang, Jeong-Mo Choi, Jerome M. Fox, Phillip W. Snyder, Demetri T. Moustakas & George M. Whitesides. (2016) Acetylation of Surface Lysine Groups of a Protein Alters the Organization and Composition of Its Crystal Contacts. The Journal of Physical Chemistry B 120:27, pages 6461-6468.
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