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Phycologia Volume 41, 2002 - Issue 1
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Articles

Rapid identification of marine algae (Raphidophyceae) using three-primer PCR amplification of nuclear internal transcribed spacer (ITS) regions from fresh and archived material

Laurie ConnellUniversity of Washington, School of Fisheries, 3707 Brooklyn Avenue NE, Seattle, Washington98105-6715, USACorrespondence[email protected]
Pages 15-21 | Accepted 20 Aug 2001, Published online: 14 Jan 2020

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Patricia I. Gómez, Ingrid Inostroza, Pablo Castro-Varela, Jeannette Silva, Alejandro Clément, Gabriel Rojas & Alejandra Aguilera Belmonte. (2022) Comparison of a Chilean strain of the ichthyotoxic phytoflagellate Heterosigma akashiwo (Raphidophyceae) with strains from France, Spain and New Zealand. Phycologia 61:1, pages 7-15.
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Katie Ayers, LesleyL. Rhodes, John Tyrrell, Melissa Gladstone & Chris Scholin. (2005) International accreditation of sandwich hybridisation assay format DNA probes for micro‐algae. New Zealand Journal of Marine and Freshwater Research 39:6, pages 1225-1231.
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Juhee Min & Kwang Young Kim. (2022) Quantification of the ichthyotoxic raphidophyte <italic>Chattonella marina</italic> complex by applying a droplet digital PCR. Algae 37:4, pages 281-291.
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Faten Ben Amor, Jihen Elleuch, Ameni Farhat, Mohamed Barkallah, Kirsty F. Smith, Idriss Ben Neila, Imen Fendri & Slim Abdelkafi. (2022) Development of a novel TaqMan qPCR assay for rapid detection and quantification of Gymnodinium catenatum for application to harmful algal bloom monitoring in coastal areas of Tunisia. Environmental Science and Pollution Research 29:42, pages 63953-63963.
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Chunyun Zhang, Yuchen Yang, Fuguo Liu, Yuanyuan Wang & Guofu Chen. (2022) Recombinase polymerase amplification combined with lateral flow dipstick for the rapid detection of Chattonella marina. Journal of Applied Phycology 34:3, pages 1607-1620.
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Dovilė Barcytė, Wenche Eikrem, Anette Engesmo, Sergio Seoane, Jens Wohlmann, Aleš Horák, Tatiana Yurchenko & Marek Eliáš. (2021) Olisthodiscus represents a new class of Ochrophyta . Journal of Phycology 57:4, pages 1094-1118.
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Dora Čertnerová & Pavel Škaloud. (2020) Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences. Annals of Botany 126:6, pages 1077-1087.
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Yue Qin, Guofu Chen, Chunyun Zhang, Yuanyuan Wang & Jin Zhou. (2019) Development of loop-mediated isothermal amplification combined with a chromatographic lateral-flow dipstick for rapid detection of Chattonella marina. Harmful Algae 89, pages 101666.
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Takeo Horiguchi. 2017. Handbook of the Protists. Handbook of the Protists 305 330 .
Takeo Horiguchi. 2016. Handbook of the Protists. Handbook of the Protists 1 26 .
Paul B. Hamilton, Keely E. Lefebvre & Roger D. Bull. (2015) Single cell PCR amplification of diatoms using fresh and preserved samples. Frontiers in Microbiology 6.
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Christopher R. Main, Lauren R. Salvitti, Edward B. Whereat & Kathryn J. Coyne. (2015) Community-Level and Species-Specific Associations between Phytoplankton and Particle-Associated Vibrio Species in Delaware's Inland Bays. Applied and Environmental Microbiology 81:17, pages 5703-5713.
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Jian Yuan, Meizhen Li & Senjie Lin. (2015) An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages. PLOS ONE 10:7, pages e0133060.
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Lisa K. Eckford-Soper & Niels Daugbjerg. (2015) Examination of six commonly used laboratory fixatives in HAB monitoring programs for their use in quantitative PCR based on Taqman probe technology. Harmful Algae 42, pages 52-59.
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Mikihide Demura, Takuro Nakayama, Fumie Kasai & Masanobu Kawachi. (2014) Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers . Phycological Research 62:2, pages 102-108.
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Michela Furlan, Marta Antonioli, Adriana Zingone, Angela Sardo, Claudia Blason, Alberto Pallavicini & Serena Fonda Umani. (2013) Molecular identification of Ostreopsis cf. ovata in filter feeders and putative predators. Harmful Algae 21-22, pages 20-29.
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Lucy E. Eland, Russell Davenport & Cesar R. Mota. (2012) Evaluation of DNA extraction methods for freshwater eukaryotic microalgae. Water Research 46:16, pages 5355-5364.
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Jian Yuan, Tiezhu Mi, Yu Zhen & Zhigang Yu. (2012) Development of a rapid detection and quantification method of Karenia mikimotoi by real-time quantitative PCR. Harmful Algae 17, pages 83-91.
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Daniela Stacca, Cecilia Teodora Satta, Silvia Casabianca, Antonella Penna, Bachisio Mario Padedda, Nicola Sechi & Antonella Lugliè. (2016) Identification of <em>Chattonella</em> (Raphidophyceae) species in long-term phytoplankton samples from Santa Giusta Lagoon, Italy. Scientia Marina 0:0.
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Kerri A. Fredrickson, Suzanne L. Strom, Ryan Crim & Kathryn J. Coyne. (2011) INTERSTRAIN VARIABILITY IN PHYSIOLOGY AND GENETICS OF HETEROSIGMA AKASHIWO (RAPHIDOPHYCEAE) FROM THE WEST COAST OF NORTH AMERICA1. Journal of Phycology 47:1, pages 25-35.
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Ruth Freire, Alberto Arias, Josefina Méndez & Ana Insua. (2010) Identification of European commercial cockles (Cerastoderma edule and C. glaucum) by species-specific PCR amplification of the ribosomal DNA ITS region. European Food Research and Technology 232:1, pages 83-86.
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Haruyo Yamaguchi, Takeshi Nakayama, Akio Murakami & Isao Inouye. (2009) Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. Journal of Plant Research 123:3, pages 333-342.
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Chantal Guidi‐Rontani, Uma Maheswari, Kamel Jabbari & Chris Bowler. (2009) Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica . New Phytologist 185:2, pages 446-458.
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Kevin M. Kocot & Scott R. Santos. (2009) Secondary structural modeling of the second internal transcribed spacer (ITS2) from Pfiesteria-like dinoflagellates (Dinophyceae). Harmful Algae 8:3, pages 441-446.
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L. Connell, R. Redman, S. Craig, G. Scorzetti, M. Iszard & R. Rodriguez. (2008) Diversity of Soil Yeasts Isolated from South Victoria Land, Antarctica. Microbial Ecology 56:3, pages 448-459.
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Ruth FREIRE, Juan FERNÁNDEZ-TAJES & Josefina MÉNDEZ. (2008) Identification of razor clams Ensis arcuatus and Ensis siliqua by PCR–RFLP analysis of ITS1 region. Fisheries Science 74:3, pages 511-515.
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Haruyo Yamaguchi, Mona Hoppenrath, Kiyotaka Takishita & Takeo Horiguchi. (2008) Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycological Research 56:2, pages 127-138.
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Barbara M. Auinger, Karin Pfandl & Jens Boenigk. (2008) Improved Methodology for Identification of Protists and Microalgae from Plankton Samples Preserved in Lugol's Iodine Solution: Combining Microscopic Analysis with Single-Cell PCR. Applied and Environmental Microbiology 74:8, pages 2505-2510.
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Antonella Penna & Luca Galluzzi. 2008. Algal Toxins: Nature, Occurrence, Effect and Detection. Algal Toxins: Nature, Occurrence, Effect and Detection 261 283 .
Tae-Gyu Park, Miguel F. de Salas, Christopher J. S. Bolch & Gustaaf M. Hallegraeff. (2007) Development of a Real-Time PCR Probe for Quantification of the Heterotrophic Dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in Environmental Samples . Applied and Environmental Microbiology 73:8, pages 2552-2560.
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Holly A. Bowers, Carmelo Tomas, Torstein Tengs, Jason W. Kempton, Alan J. Lewitus & David W. Oldach. (2006) RAPHIDOPHYCEAE [CHADEFAUD EX SILVA] SYSTEMATICS AND RAPID IDENTIFICATION: SEQUENCE ANALYSES AND REAL‐TIME PCR ASSAYS 1 . Journal of Phycology 42:6, pages 1333-1348.
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Shoko HOSOI-TANABE, Isamu OTAKE & Yoshihiko SAKO. (2006) Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C.�marina, C.�ovata, and C.�verruculosa (Raphidophyceae) based on the rRNA gene family. Fisheries Science 72:6, pages 1200-1208.
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A.K.L. Kai, Y.K. Cheung, P.K.K. Yeung & J.T.Y. Wong. (2006) Development of single-cell PCR methods for the Raphidophyceae. Harmful Algae 5:6, pages 649-657.
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Chris O’Halloran, Mary W. Silver, Theodore R. Holman & Christopher A. Scholin. (2006) Heterosigma akashiwo in central California waters. Harmful Algae 5:2, pages 124-132.
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Luca Galluzzi, Antonella Penna, Elena Bertozzini, Maria Grazia Giacobbe, Magda Vila, Esther Garcés, Silvia Prioli & Mauro Magnani. (2005) Development of a qualitative PCR method for the Alexandrium spp. (Dinophyceae) detection in contaminated mussels (Mytilus galloprovincialis). Harmful Algae 4:6, pages 973-983.
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Donald M. Anderson, David M. Kulis, Bruce A. Keafer, Kristin E. Gribble, Roman Marin & Christopher A. Scholin. (2005) Identification and enumeration of Alexandrium spp. from the Gulf of Maine using molecular probes. Deep Sea Research Part II: Topical Studies in Oceanography 52:19-21, pages 2467-2490.
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Shin-Ichiro AKASE, Takeshi YOSHIKAWA, Noriko HAYAKAWA, Hiroto MAEDA & Taizo SAKATA. (2004) Molecular identification of red tide-causing microalga Heterosigma akashiwo strains based on their chloroplast DNA sequences. Fisheries Science 70:6, pages 1043-1050.
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Luca GalluzziAntonella PennaElena BertozziniMagda Vila, Esther Garcés & Mauro Magnani. (2004) Development of a Real-Time PCR Assay for Rapid Detection and Quantification of Alexandrium minutum (a Dinoflagellate) . Applied and Environmental Microbiology 70:2, pages 1199-1206.
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R. Wayne Litaker, Mark W. Vandersea, Steven R. Kibler, Kimberly S. Reece, Nancy A. Stokes, Karen A. Steidinger, Dave F. Millie, Brian J. Bendis, Ryan J. Pigg & Patricia A. Tester. (2003) IDENTIFICATION OF PFIESTERIA PISCICIDA (DINOPHYCEAE) AND PFIESTERIA-LIKE ORGANISMS USING INTERNAL TRANSCRIBED SPACER-SPECIFIC PCR ASSAYS1. Journal of Phycology 39:4, pages 754-761.
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John V Tyrrell, Laurie B Connell & Chris A Scholin. (2002) Monitoring for Heterosigma akashiwo using a sandwich hybridization assay. Harmful Algae 1:2, pages 205-214.
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