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Genotyping of Mycobacterium Tuberculosis: Application in Epidemiologic Studies

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Pages 203-216 | Published online: 02 Mar 2011

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Iñaki Comas & Jennifer L. Gardy. (2018) TB Transmission: Closing the Gaps. EBioMedicine 34, pages 4-5.
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B. Molina-Moya, A. Lacoma, N. García-Sierra, S. Blanco, L. Haba, S. Samper, J. Ruiz-Manzano, C. Prat, C. Arnold & J. Domínguez. (2017) PyroTyping, a novel pyrosequencing-based assay for Mycobacterium tuberculosis genotyping. Scientific Reports 7:1.
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Jennifer L Guthrie, David C Alexander, Alex Marchand-Austin, Karen Lam, Michael Whelan, Brenda Lee, Colin Furness, Elizabeth Rea, Rebecca Stuart, Julia Lechner, Monali Varia, Jennifer McLean & Frances B Jamieson. (2017) Technology and tuberculosis control: the OUT-TB Web experience. Journal of the American Medical Informatics Association 24:e1, pages e136-e142.
Crossref
Leopold D. Tientcheu, Anastasia Koch, Mthawelenga Ndengane, Genevieve Andoseh, Beate Kampmann & Robert J Wilkinson. (2017) Immunological consequences of strain variation within the Mycobacterium tuberculosis complex . European Journal of Immunology 47:3, pages 432-445.
Crossref
Jennifer L. Guthrie & Jennifer L. Gardy. (2016) A brief primer on genomic epidemiology: lessons learned from Mycobacterium tuberculosis . Annals of the New York Academy of Sciences 1388:1, pages 59-77.
Crossref
V Pavithra & K Vineeth Kumar. (2016) Oral Tuberculosis with Advanced Diagnostic Trends. World Journal of Dentistry 7:4, pages 203-207.
Crossref
Hollie-Ann Hatherell, Caroline Colijn, Helen R. Stagg, Charlotte Jackson, Joanne R. Winter & Ibrahim Abubakar. (2016) Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review. BMC Medicine 14:1.
Crossref
Larry D. Teeter, Padmaja Vempaty, Duc T. M. Nguyen, Jane Tapia, Sharon Sharnprapai, Smita Ghosh, J. Steven Kammerer, Roque Miramontes, Wendy A. Cronin & Edward A. Graviss. (2016) Validation of genotype cluster investigations for Mycobacterium tuberculosis: application results for 44 clusters from four heterogeneous United States jurisdictions. BMC Infectious Diseases 16:1.
Crossref
Ricardo César Tavares Carvalho, Sidra Ezidio Gonçalves Vasconcellos, Marina de Azevedo Issa, Paulo Martins Soares Filho, Pedro Moacyr Pinto Coelho Mota, Flábio Ribeiro de Araújo, Ana Carolina da Silva Carvalho, Harrison Magdinier Gomes, Philip Noel Suffys, Eduardo Eustáquio de Souza Figueiredo & Vânia Margaret Flosi Paschoalin. (2016) Molecular Typing of Mycobacterium bovis from Cattle Reared in Midwest Brazil. PLOS ONE 11:9, pages e0162459.
Crossref
Patricia J. Simner, Gail L. Woods & Nancy L. Wengenack. 2016. Diagnostic Microbiology of the Immunocompromised Host. Diagnostic Microbiology of the Immunocompromised Host 367 389 .
Patricia J. Simner, Gail L. Woods & Nancy L. Wengenack. (2016) Mycobacteria. Microbiology Spectrum 4:4.
Crossref
David Stucki, Marie Ballif, Matthias Egger, Hansjakob Furrer, Ekkehardt Altpeter, Manuel Battegay, Sara Droz, Thomas Bruderer, Mireia Coscolla, Sonia Borrell, Kathrin Zürcher, Jean-Paul Janssens, Alexandra Calmy, Jesica Mazza Stalder, Katia Jaton, Hans L. Rieder, Gaby E. Pfyffer, Hans H. Siegrist, Matthias Hoffmann, Jan Fehr, Marisa Dolina, Reno Frei, Jacques Schrenzel, Erik C. Böttger, Sebastien Gagneux & Lukas Fenner. (2016) Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence Country. Journal of Clinical Microbiology 54:7, pages 1862-1870.
Crossref
Inmaculada C. Pérez del Molino Bernal, Troels Lillebaek, Mathias K. Pedersen, Luis Martinez-Martinez, Dorte B. Folkvardsen, Jesús Agüero & E. Michael Rasmussen. (2016) Genomic Diversity of Mycobacterium tuberculosis Complex Strains in Cantabria (Spain), a Moderate TB Incidence Setting. PLOS ONE 11:6, pages e0157266.
Crossref
Vlad Nikolayevskyy, Katharina Kranzer, Stefan Niemann & Francis Drobniewski. (2016) Whole genome sequencing of Mycobacterium tuberculosis for detection of recent transmission and tracing outbreaks: A systematic review. Tuberculosis 98, pages 77-85.
Crossref
Vladyslav Nikolayevskyy, Doris Hillemann, Elvira Richter, Nada Ahmed, Marieke J. van der Werf, Csaba Kodmon, Francis Drobniewski & Sabine Ruesch-Gerdes. (2016) External Quality Assessment for Tuberculosis Diagnosis and Drug Resistance in the European Union: A Five Year Multicentre Implementation Study. PLOS ONE 11:4, pages e0152926.
Crossref
Vladyslav Nikolayevskyy, Alberto Trovato, Agnieszka Broda, Emanuele Borroni, Daniela Cirillo & Francis Drobniewski. (2016) MIRU-VNTR Genotyping of Mycobacterium tuberculosis Strains Using QIAxcel Technology: A Multicentre Evaluation Study. PLOS ONE 11:3, pages e0149435.
Crossref
Michal Slany, Vit Ulmann & Iva Slana. (2016) Avian Mycobacteriosis: Still Existing Threat to Humans. BioMed Research International 2016, pages 1-12.
Crossref
Philip C. Hopewell, Midori Kato-Maeda & Joel D. Ernst. 2016. Murray and Nadel's Textbook of Respiratory Medicine. Murray and Nadel's Textbook of Respiratory Medicine 593 628.e20 .
Eddie M. Wampande, Stavroula K. Hatzios, Beatrice Achan, Ezekiel Mupere, Mary Nsereko, Harriet K. Mayanja, Kathleen Eisenach, W Henry Boom, Sebastien Gagneux & Moses L. Joloba. (2015) A single-nucleotide-polymorphism real-time PCR assay for genotyping of Mycobacterium tuberculosis complex in peri-urban Kampala. BMC Infectious Diseases 15:1.
Crossref
Nayanne Gama Teixeira Dantas, Phillip Noel Suffys, Wânia da Silva Carvalho, Harrison Magdinier Gomes, Isabela Neves de Almeida, Lida Jouca de Assis, Claudio José Augusto, Michel Kireopori Gomgnimbou, Guislaine Refregier, Christophe Sola & Silvana Spíndola de Miranda. (2015) Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil. BMC Infectious Diseases 15:1.
Crossref
Jason Xu, Peter Guttorp, Midori Kato-Maeda & Vladimir N. Minin. (2015) Likelihood-Based Inference for Discretely Observed Birth–Death-Shift Processes, with Applications to Evolution of Mobile Genetic Elements. Biometrics 71:4, pages 1009-1021.
Crossref
M. FACCINI, S. CANTONI, G. CICONALI, M. T. FILIPPONI, G. MAINARDI, A. F. MARINO, S. SENATORE, L. R. CODECASA, M. FERRARESE, G. GESU, E. MAZZOLA & A. FILIA. (2015) Tuberculosis-related stigma leading to an incomplete contact investigation in a low-incidence country. Epidemiology and Infection 143:13, pages 2841-2848.
Crossref
Francesca Barletta, Larissa Otero, Bouke C. de Jong, Tomotada Iwamoto, Kentaro Arikawa, Patrick Van der Stuyft, Stefan Niemann, Matthias Merker, Cécile Uwizeye, Carlos Seas & Leen Rigouts. (2015) Predominant Mycobacterium tuberculosis Families and High Rates of Recent Transmission among New Cases Are Not Associated with Primary Multidrug Resistance in Lima, Peru. Journal of Clinical Microbiology 53:6, pages 1854-1863.
Crossref
David Stucki, Marie Ballif, Thomas Bodmer, Mireia Coscolla, Anne-Marie Maurer, Sara Droz, Christa Butz, Sonia Borrell, Christel Längle, Julia Feldmann, Hansjakob Furrer, Carlo Mordasini, Peter Helbling, Hans L. Rieder, Matthias Egger, Sébastien Gagneux & Lukas Fenner. (2015) Tracking a Tuberculosis Outbreak Over 21 Years: Strain-Specific Single-Nucleotide Polymorphism Typing Combined With Targeted Whole-Genome Sequencing. The Journal of Infectious Diseases 211:8, pages 1306-1316.
Crossref
Samantha Flores-Treviño, Rayo Morfín-Otero, Eduardo Rodríguez-Noriega, Esteban González-Díaz, Héctor R. Pérez-Gómez, Virgilio Bocanegra-García, Lucio Vera-Cabrera & Elvira Garza-González. (2015) Genetic Diversity of Mycobacterium tuberculosis from Guadalajara, Mexico and Identification of a Rare Multidrug Resistant Beijing Genotype. PLOS ONE 10:2, pages e0118095.
Crossref
F. Brossier, C. Sola, G. Millot, V. Jarlier, N. Veziris & W. Sougakoff. (2014) Comparison of a Semiautomated Commercial Repetitive-Sequence-Based PCR Method with Spoligotyping, 24-Locus Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat Typing, and Restriction Fragment Length Polymorphism-Based Analysis of IS 6110 for Mycobacterium tuberculosis Typing . Journal of Clinical Microbiology 52:11, pages 4082-4086.
Crossref
Amador Goodridge, Pedro Almengor, Amada Domínguez, Silvio Vega, Ricardo Correa & Dilcia Sambrano. (2014) Mycobacterium tuberculosis Isolates from Single Outpatient Clinic in Panama City Exhibit Wide Genetic Diversity. The American Journal of Tropical Medicine and Hygiene 91:2, pages 310-312.
Crossref
Charles R. Doss, Marc A. Suchard, Ian Holmes, Midori Kato-Maeda & Vladimir N. Minin. (2013) Fitting birth–death processes to panel data with applications to bacterial DNA fingerprinting. The Annals of Applied Statistics 7:4.
Crossref
Nguyen Van Hung, Hiroki Ando, Tran Thi-Bich Thuy, Tomoko Kuwahara, Nguyen Thi-Le Hang, Shinsaku Sakurada, Pham Huu Thuong, Luu Thi Lien & Naoto Keicho. (2013) Clonal expansion of Mycobacterium tuberculosis isolates and coexisting drug resistance in patients newly diagnosed with pulmonary tuberculosis in Hanoi, Vietnam. BMC Research Notes 6:1.
Crossref
Francis Drobniewski, Vladyslav Nikolayevskyy, Horst Maxeiner, Yanina Balabanova, Nicola Casali, Irina Kontsevaya & Olga Ignatyeva. (2013) Rapid diagnostics of tuberculosis and drug resistance in the industrialized world: clinical and public health benefits and barriers to implementation. BMC Medicine 11:1.
Crossref
Johana Monteserin, Mirtha Camacho, Lucía Barrera, Juan Carlos Palomino, Viviana Ritacco & Anandi Martin. (2013) Genotypes of Mycobacterium tuberculosis in patients at risk of drug resistance in Bolivia. Infection, Genetics and Evolution 17, pages 195-201.
Crossref
Midori Kato-Maeda, Christine Ho, Ben Passarelli, Niaz Banaei, Jennifer Grinsdale, Laura Flores, Jillian Anderson, Megan Murray, Graham Rose, L. Masae Kawamura, Nader Pourmand, Muhammad A. Tariq, Sebastien Gagneux & Philip C. Hopewell. (2013) Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak. PLoS ONE 8:3, pages e58235.
Crossref
Marcos Burgos. 2013. Dynamic Models of Infectious Diseases. Dynamic Models of Infectious Diseases 111 146 .
Sebastien Gagneux. 2013. Pathogenesis of Mycobacterium tuberculosis and its Interaction with the Host Organism. Pathogenesis of Mycobacterium tuberculosis and its Interaction with the Host Organism 1 25 .
Lisa V. Adams, Barry N. Kreiswirth, Robert D. Arbeit, Hanna Soini, Lillian Mtei, Mecky Matee, Muhammad Bakari, Timothy Lahey, Wendy Wieland-Alter, Elena Shashkina, Natalia Kurepina, Jeffrey R. Driscoll, Kisali Pallangyo, C. Robert Horsburgh & C. Fordham von Reyn. (2012) Molecular Epidemiology of HIV-Associated Tuberculosis in Dar es Salaam, Tanzania: Strain Predominance, Clustering, and Polyclonal Disease. Journal of Clinical Microbiology 50:8, pages 2645-2650.
Crossref
David Stucki, Bijaya Malla, Simon Hostettler, Thembela Huna, Julia Feldmann, Dorothy Yeboah-Manu, Sonia Borrell, Lukas Fenner, Iñaki Comas, Mireia Coscollà & Sebastien Gagneux. (2012) Two New Rapid SNP-Typing Methods for Classifying Mycobacterium tuberculosis Complex into the Main Phylogenetic Lineages. PLoS ONE 7:7, pages e41253.
Crossref
NICHOLAS D. WALTER, MICHAEL STRONG, ROBERT BELKNAP, DIANE J. ORDWAY, CHARLES L. DALEY & EDWARD D. CHAN. (2012) Translating basic science insight into public health action for multidrug‐ and extensively drug‐resistant tuberculosis. Respirology 17:5, pages 772-791.
Crossref
Stefan Panaiotov, Massimo Amicosante, Marc Govaerts, Patrick Butaye, Elizabeta Bachiyska, Nadia Brankova & Victoria Levterova. 2012. BSL3 and BSL4 Agents. BSL3 and BSL4 Agents 149 171 .
Ailyn C. Pérez-Osorio, David S. Boyle, Zachary K. Ingham, Alla Ostash, Romesh K. Gautom, Craig Colombel, Yolanda Houze & Brandon T. Leader. (2012) Rapid Identification of Mycobacteria and Drug-Resistant Mycobacterium tuberculosis by Use of a Single Multiplex PCR and DNA Sequencing. Journal of Clinical Microbiology 50:2, pages 326-336.
Crossref
Iñaki Comas & Sebastien Gagneux. (2011) A role for systems epidemiology in tuberculosis research. Trends in Microbiology 19:10, pages 492-500.
Crossref
W. Sougakoff. (2011) Molecular epidemiology of multidrug-resistant strains of Mycobacterium tuberculosis. Clinical Microbiology and Infection 17:6, pages 800-805.
Crossref

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