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DNA Sequence Volume 4, 1993 - Issue 3
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Original Article

Positive and negative regulatory elements of the rabbit embryonic ϵ-globin gene revealed by an improved multiple alignment program and functional analysis

Ross Hardison Department of Molecular and Cell Biology, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
Kun-Mao Chao Department of Computer Science, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
Michael Adamkiewicz Department of Molecular and Cell Biology, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
Doug Price Department of Molecular and Cell Biology, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
John Jackson Department of Molecular and Cell Biology, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
Tim Zeigler Department of Molecular and Cell Biology, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
,
Nikola Stojanovic Department of Computer Science, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
&
Webb Miller Department of Computer Science, Center for Gene Regulation and Institute for Molecular Evolutionary Genetics, The Pennsylvania State University, University Park, PA, 16802
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Pages 163-176 | Received 18 Jun 1993, Published online: 11 Jul 2009

Citations (23)

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Read on this site (2)

William L. Trepicchio, Michael A. Dyer & Margaret H. Baron. (1994) A Novel Developmental Regulatory Motif Required for Stage-Specific Activation of the ɛ-Globin Gene and Nuclear Factor Binding in Embryonic Erythroid Cells. Molecular and Cellular Biology 14:6, pages 3763-3771.
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William L. Trepicchio, Michael A. Dyer, Ross C. Hardison & Margaret H. Baron. (1994) Upstream regulatory region of the human embryonic β-like globin gene, ϵ. DNA Sequence 4:6, pages 409-412.
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Articles from other publishers (21)

Yi Chen & Yan-qin Bai. (2009) General space-efficient sampling algorithm for suboptimal alignment. Journal of Shanghai University (English Edition) 13:5, pages 412-416.
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Vidushi S Patel, Steven JB Cooper, Janine E Deakin, Bob Fulton, Tina Graves, Wesley C Warren, Richard K Wilson & Jennifer AM Graves. (2008) Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals. BMC Biology 6:1.
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Olga P. Zoueva, Lisa J. Garrett, David Bodine & Griffin P. Rodgers. (2008) BP1 motif in the human β-globin promoter affects β-globin expression during embryonic/fetal erythropoiesis in transgenic mice bearing the human β-globin gene. Blood Cells, Molecules, and Diseases 41:3, pages 244-251.
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A. Manohar & S. Batzoglou. (2005) TreeRefiner: a tool for refining a multiple alignment on a phylogenetic tree. TreeRefiner: a tool for refining a multiple alignment on a phylogenetic tree.
Olga P. Zoueva & Griffin P. Rodgers. (2004) Inhibition of β protein 1 expression enhances β-globin promoter activity and β-globin mRNA levels in the human erythroleukemia (K562) cell line. Experimental Hematology 32:8, pages 700-708.
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Nicolas Bray & Lior Pachter. (2004) MAVID: Constrained Ancestral Alignment of Multiple Sequences. Genome Research 14:4, pages 693-699.
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Michael Brudno, Chuong B. Do, Gregory M. Cooper, Michael F. Kim, Eugene Davydov, NISC Comparative Sequencing Program, Eric D. Green, Arend Sidow & Serafim Batzoglou. (2003) LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA. Genome Research 13:4, pages 721-731.
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Milind C. MahajanSherman M. Weissman. (2002) DNA-dependent adenosine triphosphatase (helicaselike transcription factor) activates β-globin transcription in K562 cells. Blood 99:1, pages 348-356.
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Laura Elnitski, Jin Li, Constance Tom Noguchi, Webb Miller & Ross Hardison. (2001) A Negative Cis-element Regulates the Level of Enhancement by Hypersensitive Site 2 of the β-Globin Locus Control Region. Journal of Biological Chemistry 276:9, pages 6289-6298.
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M.A. BenderAndreas ReikJennie CloseAgnes TellingElliot EpnerSteven FieringRoss HardisonMark Groudine. (1998) Description and Targeted Deletion of 5′ Hypersensitive Site 5 and 6 of the Mouse β-Globin Locus Control Region. Blood 92:11, pages 4394-4403.
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Jin Li, Constance T. Noguchi, Webb Miller, Ross Hardison & Alan N. Schechter. (1998) Multiple Regulatory Elements in the 5′-Flanking Sequence of the Human ε-Globin Gene. Journal of Biological Chemistry 273:17, pages 10202-10209.
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Kun-Mao Chao. (1998) On computing all suboptimal alignments. Information Sciences 105:1-4, pages 189-207.
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Laura Elnitski, Webb Miller & Ross Hardison. (1997) Conserved E Boxes Function as Part of the Enhancer in Hypersensitive Site 2 of the β-Globin Locus Control Region. Journal of Biological Chemistry 272:1, pages 369-378.
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Suyinn Chong & Anita A. Piper. (1996) Methylation sensitive protein binding to an intragenic active X-specific methylated region in theM. robustus HPRT gene. Somatic Cell and Molecular Genetics 22:6, pages 461-476.
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John D. Jackson, Hanna Petrykowska, Sjaak Philipsen, Webb Miller & Ross Hardison. (1996) Role of DNA Sequences Outside the Cores of DNase Hypersensitive Sites (HSs) in Functions of the β-Globin Locus Control Region. Journal of Biological Chemistry 271:20, pages 11871-11878.
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Kun -Mao Chao & W. Miller. (1995) Linear-space algorithms that build local alignments from fragments. Algorithmica 13:1-2, pages 106-134.
Crossref
W. Miller, A. Elsherbini, J. Peck, C. Riemer, S. Schwartz, N. Stojanovic & R. Hardison. (1995) A database for globin gene expression data. A database for globin gene expression data.
KUN-MAO CHAO, ROSS C. HARDISON & WEBB MILLER. (1994) Recent Developments in Linear-Space Alignment Methods: A Survey. Journal of Computational Biology 1:4, pages 271-291.
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ZHENG ZHANG, BALAJI RAGHAVACHARI, ROSS C. HARDISON & WEBB MILLER. (1994) Chaining Multiple-Alignment Blocks. Journal of Computational Biology 1:3, pages 217-226.
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Xiaoqiu Huang, Pavel A. Pevzner & Webb Miller. 1994. Combinatorial Pattern Matching. Combinatorial Pattern Matching 87 101 .
Kun -Mao Chao. 1994. Combinatorial Pattern Matching. Combinatorial Pattern Matching 31 42 .

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