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Free Radical Research Volume 45, 2011 - Issue 2
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Review Article

An assay for RNA oxidation induced abasic sites using the Aldehyde Reactive Probe

Mikiei Tanaka Reynolds Oklahoma Center on Aging, Department of Geriatric Medicine, University of Oklahoma Health Sciences Center, 975 NE 10 street, Stanton L. Young BRC 1305, Oklahoma City, OK 73104, USACorrespondence[email protected]
,
Han Song Reynolds Oklahoma Center on Aging, Department of Geriatric Medicine, University of Oklahoma Health Sciences Center, 975 NE 10 street, Stanton L. Young BRC 1305, Oklahoma City, OK 73104, USA
,
Pascal A. Küpfer Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
,
Christian J. Leumann Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
&
William E. Sonntag Reynolds Oklahoma Center on Aging, Department of Geriatric Medicine, University of Oklahoma Health Sciences Center, 975 NE 10 street, Stanton L. Young BRC 1305, Oklahoma City, OK 73104, USA
Pages 237-247 | Received 04 Aug 2010, Accepted 17 Oct 2010, Published online: 10 Nov 2010

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Tanya Prashar, Fernand De La Selle & Katalin A. Hudak. (2023) Abasic RNA: its formation and potential role in cellular stress response. RNA Biology 20:1, pages 348-358.
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Articles from other publishers (24)

L. Deng, J. Kumar, R. Rose, W. McIntyre & Daniele Fabris. (2022) Analyzing RNA posttranscriptional modifications to decipher the epitranscriptomic code. Mass Spectrometry Reviews 43:1, pages 5-38.
Crossref
Rehab F. Abdelhamid & Seiichi Nagano. (2023) Crosstalk between Oxidative Stress and Aging in Neurodegeneration Disorders. Cells 12:5, pages 753.
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Jie Zhao & Yan Gong. (2022) Amiloride-modulated phosphorescence turn-off/on method for the detection of abasic site-containing dsRNA based on uridine triphosphate-capped Mn-doped ZnS quantum dots. Arabian Journal of Chemistry 15:9, pages 104050.
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Jagna Chmielowska-Bąk, Karolina Izbiańska-Jankowska & Joanna Deckert. 2022. Reactive Oxygen Species in Plants. Reactive Oxygen Species in Plants 125 134 .
Ravi Kumar Alluri, Zhongwei Li & Keith R. McCrae. (2021) Stress Granule-Mediated Oxidized RNA Decay in P-Body: Hypothetical Role of ADAR1, Tudor-SN, and STAU1. Frontiers in Molecular Biosciences 8.
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Mikiei Tanaka & P. Boon Chock. (2021) Oxidative Modifications of RNA and Its Potential Roles in Biosystem. Frontiers in Molecular Biosciences 8.
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Yaojuan LiuYesenia RodriguezRobert L. RossRuoxia ZhaoJason A. WattsChristopher GrunseichAlan BruzelDongjun LiJoshua T. BurdickRajendra Prasad, Robert J. Crouch, Patrick A. LimbachSamuel H. WilsonVivian G. Cheung. (2020) RNA abasic sites in yeast and human cells. Proceedings of the National Academy of Sciences 117:34, pages 20689-20695.
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Xuefei Zhang, Lingling Wang, Haixia Li, Lei Zhang, Xiulan Zheng & Wen Cheng. (2020) Crosstalk between noncoding RNAs and ferroptosis: new dawn for overcoming cancer progression. Cell Death & Disease 11:7.
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Natalia Shcherbik & Dimitri G. Pestov. (2019) The Impact of Oxidative Stress on Ribosomes: From Injury to Regulation. Cells 8:11, pages 1379.
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Luca Pandolfini, Isaia Barbieri, Andrew J. Bannister, Alan Hendrick, Byron Andrews, Natalie Webster, Pierre Murat, Pia Mach, Rossella Brandi, Samuel C. Robson, Valentina Migliori, Andrej Alendar, Mara d’Onofrio, Shankar Balasubramanian & Tony Kouzarides. (2019) METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation. Molecular Cell 74:6, pages 1278-1290.e9.
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Yuri Motorin & Mark Helm. (2019) Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies. Genes 10:1, pages 35.
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Jessica Willi, Pascal Küpfer, Damien Evéquoz, Guillermo Fernandez, Assaf Katz, Christian Leumann & Norbert Polacek. (2018) Oxidative stress damages rRNA inside the ribosome and differentially affects the catalytic center. Nucleic Acids Research 46:4, pages 1945-1957.
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Jagna Chmielowska-Bąk, Karolina Izbiańska, Anna Ekner-Grzyb, Melike Bayar & Joanna Deckert. (2018) Cadmium Stress Leads to Rapid Increase in RNA Oxidative Modifications in Soybean Seedlings. Frontiers in Plant Science 8.
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Akihiko Nunomura, Hyoung-gon LeeXiongwei ZhuGeorge Perry. (2017) Consequences of RNA oxidation on protein synthesis rate and fidelity: implications for the pathophysiology of neuropsychiatric disorders. Biochemical Society Transactions 45:5, pages 1053-1066.
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Rui Feng, Gang Liang, Liang-Hong Guo & Yi-Ping Wu. (2017) A chemical toxicity sensor based on the electrochemiluminescence quantification of apurinic/apyrimidinic sites in double-stranded DNA monolayer. Sensors and Actuators B: Chemical 248, pages 512-518.
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Yu Jung Choi, Stephanie J. Chang, Krzysztof S. Gibala & Marino J. E. Resendiz. (2017) 8-Oxo-7,8-dihydroadenine and 8-Oxo-7,8-dihydroadenosine-Chemistry, Structure, and Function in RNA and Their Presence in Natural Products and Potential Drug Derivatives. Chemistry - A European Journal 23:28, pages 6706-6716.
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Yu J. Choi, Krzysztof S. Gibala, Tewoderos Ayele, Katherine V. Deventer & Marino?J.?E. Resendiz. (2016) Biophysical properties, thermal stability and functional impact of 8-oxo-7,8-dihydroguanine on oligonucleotides of RNA?a study of duplex, hairpins and the aptamer for preQ 1 as models . Nucleic Acids Research, pages gkw885.
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Kanti Bhooshan Pandey & Syed Ibrahim Rizvi. 2015. Free Radicals in Human Health and Disease. Free Radicals in Human Health and Disease 279 290 .
Pascal A. Küpfer & Christian J. Leumann. 2014. Chemical Biology of Nucleic Acids. Chemical Biology of Nucleic Acids 75 94 .
Kimberly D. Jacob, Nicole Noren Hooten, Andrzej R. Trzeciak & Michele K. Evans. (2013) Markers of oxidant stress that are clinically relevant in aging and age-related disease. Mechanisms of Ageing and Development 134:3-4, pages 139-157.
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Akihiko Nunomura, Paula I. Moreira, Rudy J. Castellani, Hyoung-gon Lee, Xiongwei Zhu, Mark A. Smith & George Perry. (2012) Oxidative Damage to RNA in Aging and Neurodegenerative Disorders. Neurotoxicity Research 22:3, pages 231-248.
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Mikiei Tanaka, Pawel Jaruga, Pascal A. Küpfer, Christian J. Leumann, Miral Dizdaroglu, William E. Sonntag & P. Boon Chock. (2012) RNA oxidation catalyzed by cytochrome c leads to its depurination and cross-linking, which may facilitate cytochrome c release from mitochondria. Free Radical Biology and Medicine 53:4, pages 854-862.
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Henrik E. Poulsen, Elisabeth Specht, Kasper Broedbaek, Trine Henriksen, Christina Ellervik, Thomas Mandrup-Poulsen, Morten Tonnesen, Peter E. Nielsen, Henrik U. Andersen & Allan Weimann. (2012) RNA modifications by oxidation: A novel disease mechanism?. Free Radical Biology and Medicine 52:8, pages 1353-1361.
Crossref
Mikiei Tanaka, Song Han, Pascal A. Küpfer, Christian J. Leumann & William E. Sonntag. (2011) Quantification of oxidized levels of specific RNA species using an aldehyde reactive probe. Analytical Biochemistry 417:1, pages 142-148.
Crossref

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