Advanced search
Publication Cover
Journal of Extracellular Vesicles Volume 4, 2015 - Issue 1
Journal homepage
1,374
Views
13
CrossRef citations to date
0
Altmetric
Original Research Articles

iSRAP – a one-touch research tool for rapid profiling of small RNA-seq data

Camelia QuekDepartment of Biochemistry and Molecular Biology Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia
,
Chol-hee JungVictorian Life Sciences Computation Initiative (VLSCI)The University of Melbourne, Melbourne, VIC, Australia
,
Shayne A. BellinghamDepartment of Biochemistry and Molecular Biology Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia
,
Andrew LonieVictorian Life Sciences Computation Initiative (VLSCI)The University of Melbourne, Melbourne, VIC, Australia
&
Andrew F. HillDepartment of Biochemistry and Molecular Biology Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia;Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, AustraliaCorrespondence[email protected]
Article: 29454 | Received 16 Aug 2015, Accepted 14 Oct 2015, Published online: 12 Nov 2015

Citations (13)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (1)

Camelia Quek, Shayne A. Bellingham, Chol-Hee Jung, Benjamin J. Scicluna, Mitch C. Shambrook, Robyn A. Sharples, Lesley Cheng & Andrew F. Hill. (2017) Defining the purity of exosomes required for diagnostic profiling of small RNA suitable for biomarker discovery. RNA Biology 14:2, pages 245-258.
Read now

Articles from other publishers (12)

Vitalik Bezuglov, Alexey Stupnikov, Ivan Skakov, Victoria Shtratnikova, J. Richard Pilsner, Alexander Suvorov & Oleg Sergeyev. (2023) Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking. International Journal of Molecular Sciences 24:4, pages 4195.
Crossref
Rena Onoguchi-Mizutani, Kenzui Taniue, Kentaro Kawata, Toshimichi Yamada & Nobuyoshi Akimitsu. 2023. Handbook of Epigenetics. Handbook of Epigenetics 163 184 .
Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti & Alfredo Pulvirenti. (2021) RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. BMC Bioinformatics 22:1.
Crossref
Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti & Roberta Bosotti. (2020) A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data. Briefings in Bioinformatics 21:6, pages 1987-1998.
Crossref
Sivarajan Karunanithi, Martin Simon & Marcel H. Schulz. (2019) Automated analysis of small RNA datasets with RAPID. PeerJ 7, pages e6710.
Crossref
Lorena Pantano, Francisco Pantano, Eulalia Marti & Shannan Ho Sui. (2019) Visualization of the small RNA transcriptome using seqclusterViz. F1000Research 8, pages 232.
Crossref
Pamela H. Russell, Brian Vestal, Wen Shi, Pratyaydipta D. Rudra, Robin Dowell, Richard Radcliffe, Laura Saba & Katerina Kechris. (2018) miR-MaGiC improves quantification accuracy for small RNA-seq. BMC Research Notes 11:1.
Crossref
Shanrong Zhao, William Gordon, Sarah Du, Chi Zhang, Wen He, Li Xi, Sachin Mathur, Michael Agostino, Theresa Paradis, David von Schack, Michael Vincent & Baohong Zhang. (2017) QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing. BMC Bioinformatics 18:1.
Crossref
Paula Carpintero-Fernández, Juan Fafián-Labora & Ana O'Loghlen. (2017) Technical Advances to Study Extracellular Vesicles. Frontiers in Molecular Biosciences 4.
Crossref
Jia Wei, Cherie Blenkiron, Peter Tsai, Joanna L. James, Qi Chen, Peter R. Stone & Lawrence W. Chamley. (2017) Placental trophoblast debris mediated feto-maternal signalling via small RNA delivery: implications for preeclampsia. Scientific Reports 7:1.
Crossref
Riccardo Panero, Antonio Rinaldi, Domenico Memoli, Giovanni Nassa, Maria Ravo, Francesca Rizzo, Roberta Tarallo, Luciano Milanesi, Alessandro Weisz & Giorgio Giurato. (2017) iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data. Bioinformatics 33:6, pages 938-940.
Crossref
Pallavi Gaur & Anoop Chaturvedi. 2017. Translational Bioinformatics and Its Application. Translational Bioinformatics and Its Application 223 248 .

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.