Citations (53)
Keep up to date with the latest research on this topic with citation updates for this article.
Read on this site (3)
Amy L. Hamilton, Michael A. Kamm, Peter De Cruz, Emily K. Wright, Hai Feng, Josef Wagner, Joseph J. Y. Sung, Carl D. Kirkwood, Michael Inouye & Shu-Mei Teo. (2020) Luminal microbiota related to Crohn’s disease recurrence after surgery. Gut Microbes 11:6, pages 1713-1728.
Read now
Read now
Yehuda Ringel, Nitsan Maharshak, Tamar Ringel-Kulka, Elizabeth Ashley Wolber, R Balfour Sartor & Ian M Carroll. (2015) High throughput sequencing reveals distinct microbial populations within the mucosal and luminal niches in healthy individuals. Gut Microbes 6:3, pages 173-181.
Read now
Read now
Anita Kondrashova & Heikki Hyöty. (2014) Role of Viruses and Other Microbes in the Pathogenesis of Type 1 Diabetes. International Reviews of Immunology 33:4, pages 284-295.
Read now
Read now
Articles from other publishers (50)
Tsunglin Liu, Cheng-Han Lin, Yi-Lin Chen, Chien-Cheng Yeh, Yuan-Yow Chiou, Jiu-Yao Wang, Chung-Ta Lee, Kuo-Ting Lee, Ai-Li Shiau, Chao-Liang Wu, Chien-Chin Chen, Jui-Wen Kang, Po-Jun Chen, Hsin-Yu Kuo, Er-Hsiang Yang & Chiao-Hsiung Chuang. (2023) Relationship Between Rectal Swab and Tissue Samples in Mucosa-associated Microbiota in Patients With Inflammatory Bowel Disease. Inflammatory Bowel Diseases.
Crossref
Crossref
Jivianne T. Lee, Carra A. SimpsonHong‐Ho Yang, Jeffrey D. SuhMarilene B. Wang, Venu LagishettyFengting LiangJonathan P. Jacobs. (2023) Fungal and Bacterial Microbiome in Sinus Mucosa of Patients with and without Chronic Rhinosinusitis. The Laryngoscope.
Crossref
Crossref
S. Graspeuntner, M. Lupatsii, L. Dashdorj, A. Rody, J. Rupp, V. Bossung & C. Härtel. (2023) First-Day-of-Life Rectal Swabs Fail To Represent Meconial Microbiota Composition and Underestimate the Presence of Antibiotic Resistance Genes. Microbiology Spectrum 11:3.
Crossref
Crossref
Shiva T. Radhakrishnan, Kate I. Gallagher, Benjamin H. Mullish, Jose I. Serrano-Contreras, James L. Alexander, Jesus Miguens Blanco, Nathan P. Danckert, Maria Valdivia-Garcia, Billy J. Hopkins, Anik Ghai, Azad Ayub, Jia V. Li, Julian R. Marchesi & Horace R. T. Williams. (2023) Rectal swabs as a viable alternative to faecal sampling for the analysis of gut microbiota functionality and composition. Scientific Reports 13:1.
Crossref
Crossref
Yosuke Tajima, Shujiro Okuda, Tsunekazu Hanai, Junichiro Hiro, Koji Masumori, Yoshikazu Koide, Tadahiro Kamiya, Yeongcheol Cheong, Gaku Inaguma, Yoshifumi Shimada, Toshifumi Wakai, Hayato Takihara, Shingo Akimoto, Hiroshi Matsuoka, Ichiro Uyama & Koichi Suda. (2022) Differential analysis of microbiomes in mucus and tissues obtained from colorectal cancer patients. Scientific Reports 12:1.
Crossref
Crossref
Hisham Hussan, Barham K. Abu Dayyeh, Jun Chen, Stephen Johnson, Ken M. Riedl, Elizabeth M. Grainger, Jeffrey Brooks, Alice Hinton, Christina Simpson & Purna C. Kashyap. (2022) Adjustable Intragastric Balloon Leads to Significant Improvement in Obesity-Related Lipidome and Fecal Microbiome Profiles: A Proof-of-Concept Study. Clinical and Translational Gastroenterology 13:7, pages e00508.
Crossref
Crossref
Nicola Luigi Bragazzi, Rola Khamisy-Farah, Christina Tsigalou & Naim Mahroum. (2022) HIV Pre-exposure Prophylaxis and Its Impact on the Gut Microbiome in Men Having Sex With Men. Frontiers in Microbiology 13.
Crossref
Crossref
Adam J. Berlinberg, Ana Brar, Andrew Stahly, Mark E. Gerich, Blair P. Fennimore, Frank I. Scott & Kristine A. Kuhn. (2022) A Novel Approach toward Less Invasive Multiomics Gut Analyses: a Pilot Study. Microbiology Spectrum 10:2.
Crossref
Crossref
Jiangbo Cheng, Weimin Wang, Deyin Zhang, Yukun Zhang, Qizhi Song, Xiaolong Li, Yuan Zhao, Dan Xu, Liming Zhao, Wenxin Li, Jianghui Wang, Bubo Zhou, Changchun Lin & Xiaoxue Zhang. (2022) Distribution and Difference of Gastrointestinal Flora in Sheep with Different Body Mass Index. Animals 12:7, pages 880.
Crossref
Crossref
Daisuke Chinda, Toshihiko Takada, Tatsuya Mikami, Kensuke Shimizu, Kosuke Oana, Tetsu Arai, Kazuki Akitaya, Hirotake Sakuraba, Miyuki Katto, Yusuke Nagara, Hiroshi Makino, Daichi Fujii, Kenji Oishi & Shinsaku Fukuda. (2022) Spatial distribution of live gut microbiota and bile acid metabolism in various parts of human large intestine. Scientific Reports 12:1.
Crossref
Crossref
Kyle Raymond Grant. 2022. Molecular Genetics and Genomics Tools in Biodiversity Conservation. Molecular Genetics and Genomics Tools in Biodiversity Conservation
203
236
.
C. Ammer-Herrmenau, T. Asendorf, G. Beyer, S. M. Buchholz, S. Cameron, M. Damm, F. Frost, R. Henker, R. Jaster, V. Phillip, M. Placzek, C. Ratei, S. Sirtl, T. van den Berg, M. J. Weingarten, J. Woitalla, J. Mayerle, V. Ellenrieder & A. Neesse. (2021) Study protocol P-MAPS: microbiome as predictor of severity in acute pancreatitis—a prospective multicentre translational study. BMC Gastroenterology 21:1.
Crossref
Crossref
Morag Clinton, Adam J. Wyness, Samuel A. M. Martin, Andrew S. Brierley & David E. K. Ferrier. (2021) Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs. BMC Microbiology 21:1.
Crossref
Crossref
Meghan I. Short, Robert Hudson, Benjamin D. Besasie, Kelly R. Reveles, Dimpy P. Shah, Susannah Nicholson, Teresa L. Johnson-Pais, Korri Weldon, Zhao Lai, Robin J. Leach, Bernard Fongang & Michael A. Liss. (2021) Comparison of rectal swab, glove tip, and participant-collected stool techniques for gut microbiome sampling. BMC Microbiology 21:1.
Crossref
Crossref
Konstantinos Georgiou, Blagoi Marinov, Ammad Ahmad Farooqi & Maria Gazouli. (2021) Gut Microbiota in Lung Cancer: Where Do We Stand?. International Journal of Molecular Sciences 22:19, pages 10429.
Crossref
Crossref
Christoph Ammer-Herrmenau, Nina Pfisterer, Tim van den Berg, Ivana Gavrilova, Ahmad Amanzada, Shiv K. Singh, Alaa Khalil, Rohia Alili, Eugeni Belda, Karine Clement, Ahmed Abd El Wahed, ElSagad Eltayeb Gady, Martin Haubrock, Tim Beißbarth, Volker Ellenrieder & Albrecht Neesse. (2021) Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems 6:4.
Crossref
Crossref
Ryan Wai-Yan Sin, Dominic Chi-Chung Foo, Deepak Narayanan Iyer, May Sau-Yee Fan, Xue Li, Oswens Siu-Hung Lo, Wai-Lun Law & Lui Ng. (2021) A Pilot Study Investigating the Expression Levels of Pluripotency-Associated Genes in Rectal Swab Samples for Colorectal Polyp and Cancer Diagnosis and Prognosis. Stem Cells International 2021, pages 1-17.
Crossref
Crossref
Jacob T. Nearing, André M. Comeau & Morgan G. I. Langille. (2021) Identifying biases and their potential solutions in human microbiome studies. Microbiome 9:1.
Crossref
Crossref
Peter Osborne, Lindsay J. Hall, Noga Kronfeld-Schor, David Thybert & Wilfried Haerty. (2020) A rather dry subject; investigating the study of arid-associated microbial communities. Environmental Microbiome 15:1.
Crossref
Crossref
Luis G. Arroyo, Laura Rossi, Bruna P Santos, Diego E Gomez, Michael G Surette & Marcio C Costa. (2020) Luminal and Mucosal Microbiota of the Cecum and Large Colon of Healthy and Diarrheic Horses. Animals 10:8, pages 1403.
Crossref
Crossref
Juliana D Bronzato, Rafael A Bomfim, David H Edwards, Dorothy Crouch, Mark P Hector & Brenda P F A Gomes. (2020) Detection of Fusobacterium in oral and head and neck cancer samples: A systematic review and meta-analysis. Archives of Oral Biology 112, pages 104669.
Crossref
Crossref
Aislinn D. Rowan-Nash, Rafael Araos, Erika M.C. D'Agata & Peter Belenky. (2020) Antimicrobial Resistance Gene Prevalence in a Population of Patients with Advanced Dementia Is Related to Specific Pathobionts. iScience 23:3, pages 100905.
Crossref
Crossref
Camilla Ceccarani, Antonella Marangoni, Marco Severgnini, Tania Camboni, Luca Laghi, Valeria Gaspari, Antonietta D'Antuono, Claudio Foschi, Maria Carla Re & Clarissa Consolandi. (2019) Rectal Microbiota Associated With Chlamydia trachomatis and Neisseria gonorrhoeae Infections in Men Having Sex With Other Men. Frontiers in Cellular and Infection Microbiology 9.
Crossref
Crossref
Melissa R. Ingala, Daniel J. Becker, Jacob Bak Holm, Karsten Kristiansen & Nancy B. Simmons. (2019) Habitat fragmentation is associated with dietary shifts and microbiota variability in common vampire bats. Ecology and Evolution 9:11, pages 6508-6523.
Crossref
Crossref
Lena M. Biehl, Debora Garzetti, Fedja Farowski, Diana Ring, Martin B. Koeppel, Holger Rohde, Philippe Schafhausen, Bärbel Stecher & Maria J. G. T. Vehreschild. (2019) Usability of rectal swabs for microbiome sampling in a cohort study of hematological and oncological patients. PLOS ONE 14:4, pages e0215428.
Crossref
Crossref
Hiroyuki Sasaki, Kazuhiro Kawamura, Toshihiro Kawamura, Toshitaka Odamaki, Noriko Katsumata, Jin-Zhong Xiao, Nao Suzuki & Mamoru Tanaka. (2019) Distinctive subpopulations of the intestinal microbiota are present in women with unexplained chronic anovulation. Reproductive BioMedicine Online 38:4, pages 570-578.
Crossref
Crossref
Emilie H. Regner, Neha Ohri, Andrew Stahly, Mark E. Gerich, Blair P. Fennimore, Diana Ir, Widian K. Jubair, Carsten Görg, Janet Siebert, Charles E. Robertson, Liron Caplan, Daniel N. Frank & Kristine A. Kuhn. (2018) Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota. Arthritis Research & Therapy 20:1.
Crossref
Crossref
Michael P. Dubé, Sung Yong Park, Heather Ross, Tanzy M. T. Love, Sheldon R. Morris & Ha Youn Lee. (2018) Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota. Scientific Reports 8:1.
Crossref
Crossref
Firas S Midani, Ana A Weil, Fahima Chowdhury, Yasmin A Begum, Ashraful I Khan, Meti D Debela, Heather K Durand, Aspen T Reese, Sai N Nimmagadda, Justin D Silverman, Crystal N Ellis, Edward T Ryan, Stephen B Calderwood, Jason B Harris, Firdausi Qadri, Lawrence A David & Regina C LaRocque. (2018) Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection. The Journal of Infectious Diseases 218:4, pages 645-653.
Crossref
Crossref
Saumya Bansal, Jenny P. Nguyen, Aleksandra Leligdowicz, Yu Zhang, Kevin C. Kain, Daniel R. Ricciuto & Bryan Coburn. (2018) Rectal and Naris Swabs: Practical and Informative Samples for Analyzing the Microbiota of Critically Ill Patients. mSphere 3:3.
Crossref
Crossref
Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kelly A. Speer & Susan L. Perkins. (2018) Comparing Microbiome Sampling Methods in a Wild Mammal: Fecal and Intestinal Samples Record Different Signals of Host Ecology, Evolution. Frontiers in Microbiology 9.
Crossref
Crossref
Yu. V. Zakharova. (2018) GUT BACTERIAL MICROBIOME OF HIV-INFECTED PEOPLE. Journal of microbiology, epidemiology and immunobiology 95:2, pages 102-109.
Crossref
Crossref
Jolinda Pollock, Laura Glendinning, Trong Wisedchanwet & Mick Watson. (2018) The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies. Applied and Environmental Microbiology 84:7.
Crossref
Crossref
Roshonda B. Jones, Xiangzhu Zhu, Emili Moan, Harvey J. Murff, Reid M. Ness, Douglas L. Seidner, Shan Sun, Chang Yu, Qi Dai, Anthony A. Fodor, M. Andrea Azcarate-Peril & Martha J. Shrubsole. (2018) Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples. Scientific Reports 8:1.
Crossref
Crossref
Nicole A. PescatoreRebecca PollakColleen S. KraftJennifer G. MulleColleen F. Kelley. (2018) Short Communication: Anatomic Site of Sampling and the Rectal Mucosal Microbiota in HIV Negative Men Who Have Sex with Men Engaging in Condomless Receptive Anal Intercourse. AIDS Research and Human Retroviruses 34:3, pages 277-281.
Crossref
Crossref
Vijay Kothari, Chinmayi Joshi, Pooja Patel, Deepa Shahi, Charmi Mehta, Bhumika Prajapati, Sweta Patel, Dipeeka Mandaliya & Sriram Seshadri. 2018. Design of Nanostructures for Versatile Therapeutic Applications. Design of Nanostructures for Versatile Therapeutic Applications
325
377
.
Aadra P. Bhatt, Matthew R. Redinbo & Scott J. Bultman. (2017) The role of the microbiome in cancer development and therapy. CA: A Cancer Journal for Clinicians 67:4, pages 326-344.
Crossref
Crossref
Grégory Dubourg, Mathieu Surenaud, Yves Lévy, Sophie Hüe & Didier Raoult. (2017) Microbiome of HIV-infected people. Microbial Pathogenesis 106, pages 85-93.
Crossref
Crossref
Alissa S. Hanshew, Marie E. Jetté, Stephanie Tadayon & Susan L. Thibeault. (2017) A comparison of sampling methods for examining the laryngeal microbiome. PLOS ONE 12:3, pages e0174765.
Crossref
Crossref
Shaocun Zhang, Xiaocang Cao & He Huang. (2017) Sampling Strategies for Three-Dimensional Spatial Community Structures in IBD Microbiota Research. Frontiers in Cellular and Infection Microbiology 7.
Crossref
Crossref
Alexander G. Shaw, Naomi BlackAzelea RushdKathleen Sim, Paul Randell, J. Simon Kroll & Jenny Epstein. (2017) Assessing the Colonic Microbiota in Children: Effects of Sample Site and Bowel Preparation. Journal of Pediatric Gastroenterology & Nutrition 64:2, pages 230-237.
Crossref
Crossref
M. Ellermann, J.S. Carr, A.A. Fodor, J.C. Arthur & I.M. Carroll. 2017. The Microbiota in Gastrointestinal Pathophysiology. The Microbiota in Gastrointestinal Pathophysiology
15
25
.
M. Altamimi, O. Abdelhay & R.A. Rastall. (2016) Effect of oligosaccharides on the adhesion of gut bacteria to human HT-29 cells. Anaerobe 39, pages 136-142.
Crossref
Crossref
Benjamin C. Fu, Timothy W. Randolph, Unhee Lim, Kristine R. Monroe, Iona Cheng, Lynne R. Wilkens, Loïc Le Marchand, Meredith A.J. Hullar & Johanna W. Lampe. (2016) Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience. Annals of Epidemiology 26:5, pages 373-379.
Crossref
Crossref
M. Čitar, B. Hacin, G. Tompa, M. Štempelj, I. Rogelj, J. Dolinšek, M. Narat & B. Bogovič Matijašić. (2015)
Human intestinal mucosa-associated
Lactobacillus
and
Bifidobacterium
strains with probiotic properties modulate IL-10, IL-6 and IL-12 gene expression in THP-1 cells
. Beneficial Microbes 6:3, pages 325-336.
Crossref
Crossref
Marcelo José Barbosa Silva, Matheus Batista Heitor Carneiro, Brunna dos Anjos Pultz, Danielle Pereira Silva, Mateus Eustáquio de Moura Lopes & Liliane Martins dos Santos. (2015) The Multifaceted Role of Commensal Microbiota in Homeostasis and Gastrointestinal Diseases. Journal of Immunology Research 2015, pages 1-14.
Crossref
Crossref
Eibhlís M. O'Connor, Eileen A. O'Herlihy & Paul W. O'Toole. (2014) Gut microbiota in older subjects: variation, health consequences and dietary intervention prospects. Proceedings of the Nutrition Society 73:4, pages 441-451.
Crossref
Crossref
W.F. Fricke, C. Maddox, Y. Song & J.S. Bromberg. (2014) Human Microbiota Characterization in the Course of Renal Transplantation. American Journal of Transplantation 14:2, pages 416-427.
Crossref
Crossref
S. J. Bultman. (2013) Emerging roles of the microbiome in cancer. Carcinogenesis 35:2, pages 249-255.
Crossref
Crossref
Aonghus Lavelle, Grainne Lennon, Neil Docherty, Aine Balfe, Hugh E. Mulcahy, Glen Doherty, Diarmuid O′Donoghue, John M. Hyland, Fergus Shanahan, Kieran Sheahan, J. Calvin Coffey, Desmond C. Winter & P. Ronan O′Connell. (2013) Depth-Dependent Differences in Community Structure of the Human Colonic Microbiota in Health. PLoS ONE 8:11, pages e78835.
Crossref
Crossref