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Prion Volume 2, 2008 - Issue 2
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Research Paper

Anti-bovine Prion protein RNA aptamer containing tandem GGA repeat interacts both with recombinant bovine prion protein and its β isoform with high affinity

Kazuyoshi Murakami University of Tsukuba; National Institute of Advanced Industrial Science and Technology (AIST), Japan
,
Fumiko Nishikawa National Institute of Advanced Industrial Science and Technology (AIST), Japan
,
Ken Noda Ministry of Agriculture, Forestry and Fisheries, Japan
,
Takashi Yokoyama National Institute of Animal Health (NIAH), Japan
&
Satoshi Nishikawa University of Tsukuba; National Institute of Advanced Industrial Science and Technology (AIST), Japan
Pages 73-80 | Received 25 Aug 2008, Accepted 17 Sep 1998, Published online: 01 Oct 2008

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Georgios C. Stefos, Georgios Theodorou & Ioannis Politis. (2021) DNA G-quadruplexes: functional significance in plant and farm animal science. Animal Biotechnology 32:2, pages 262-271.
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Articles from other publishers (37)

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Yuka Iwasaki, Yurino Ookuro, Keisuke Iida, Kazuo Nagasawa & Wataru Yoshida. (2022) Destabilization of DNA and RNA G-quadruplex structures formed by GGA repeat due to N6-methyladenine modification. Biochemical and Biophysical Research Communications 597, pages 134-139.
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Kazuma Murakami, Naotaka Izuo & Gal Bitan. (2022) Aptamers targeting amyloidogenic proteins and their emerging role in neurodegenerative diseases. Journal of Biological Chemistry 298:1, pages 101478.
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Michael T. Banco & Adrian R. Ferré-D'Amaré. (2021) The emerging structural complexity of G-quadruplex RNAs. RNA 27:4, pages 390-402.
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Jussara AmatoTsukasa MashimaYuji O. KamatariKazuo KuwataEttore NovellinoAntonio RandazzoConcetta GiancolaMasato KatahiraBruno Pagano. (2020) Improved Anti-Prion Nucleic Acid Aptamers by Incorporation of Chemical Modifications. Nucleic Acid Therapeutics 30:6, pages 414-421.
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Tsukasa Mashima, Joon-Hwa Lee, Yuji O. Kamatari, Tomohiko Hayashi, Takashi Nagata, Fumiko Nishikawa, Satoshi Nishikawa, Masahiro Kinoshita, Kazuo Kuwata & Masato Katahira. (2020) Development and structural determination of an anti-PrPC aptamer that blocks pathological conformational conversion of prion protein. Scientific Reports 10:1.
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Prashant Pradhan, Ankit Srivastava, Jasdeep Singh, Banhi Biswas, Akanksha Saini, Ibrar Siddique, Pooja Kumari, Mohd. Asim Khan, Akhilesh Mishra, Pramod Kumar Yadav, Shivani Kumar, Neel Sarovar Bhavesh, Prasanna Venkatraman, Perumal Vivekanandan & Bishwajit Kundu. (2020) Prion protein transcription is auto-regulated through dynamic interactions with G-quadruplex motifs in its own promoter. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1863:3, pages 194479.
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Mamiko Iida, Tsukasa Mashima, Yudai Yamaoki, Masatomo So, Takashi Nagata & Masato Katahira. (2019) The anti‐prion RNA aptamer R12 disrupts the Alzheimer's disease‐related complex between prion and amyloid β. The FEBS Journal 286:12, pages 2355-2365.
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Farid Rahimi. (2018) Aptamers Selected for Recognizing Amyloid β-Protein—A Case for Cautious Optimism. International Journal of Molecular Sciences 19:3, pages 668.
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Alix Bouvier-Müller & Frédéric Ducongé. (2018) Nucleic acid aptamers for neurodegenerative diseases. Biochimie 145, pages 73-83.
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Pascal Röthlisberger, Cécile Gasse & Marcel Hollenstein. (2017) Nucleic Acid Aptamers: Emerging Applications in Medical Imaging, Nanotechnology, Neurosciences, and Drug Delivery. International Journal of Molecular Sciences 18:11, pages 2430.
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Bruno Macedo & Yraima Cordeiro. (2017) Unraveling Prion Protein Interactions with Aptamers and Other PrP-Binding Nucleic Acids. International Journal of Molecular Sciences 18:5, pages 1023.
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Kazuyoshi Murakami, Jing Zhao, Kazuhiko Yamasaki & Makoto Miyagishi. (2017) Biochemical and structural features of extracellular vesicle-binding RNA aptamers. Biomedical Reports.
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J.C. Corrêa-Velloso, I.C. Nascimento, A.A. Nery & H. Ulrich. 2017. Current Developments in Biotechnology and Bioengineering. Current Developments in Biotechnology and Bioengineering 125 142 .
Ye Li, Shi Xu, Xiao Wu, Qing Xu, Yinhua Zhao, Xinhui Lou & Xianbin Yang. (2016) Thioflavin T as a fluorescence light-up probe for both parallel and antiparallel G-quadruplexes of 29-mer thrombin binding aptamer. Analytical and Bioanalytical Chemistry 408:28, pages 8025-8036.
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Lukas Aaldering, Shilpa Krishnan, Sue Fletcher, Stephen Wilton & Rakesh Veedu. 2016. Aptamers. Aptamers 151 167 .
Kaori Tsukakoshi, Yuri Ikuta, Koichi Abe, Wataru Yoshida, Keisuke Iida, Yue Ma, Kazuo Nagasawa, Koji Sode & Kazunori Ikebukuro. (2016) Structural regulation by a G-quadruplex ligand increases binding abilities of G-quadruplex-forming aptamers. Chemical Communications 52:85, pages 12646-12649.
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Masato Katahira. 2015. Long Noncoding RNAs. Long Noncoding RNAs 47 56 .
Erin M. McConnellMatthew R. HolahanMaria C. DeRosa. (2014) Aptamers as Promising Molecular Recognition Elements for Diagnostics and Therapeutics in the Central Nervous System. Nucleic Acid Therapeutics 24:6, pages 388-404.
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T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira & M. Kinoshita. (2014) Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition. Nucleic Acids Research 42:11, pages 6861-6875.
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Md. Ashrafuzzaman. (2014) Aptamers as Both Drugs and Drug-Carriers. BioMed Research International 2014, pages 1-21.
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Paola Cavaliere, Bruno Pagano, Vincenzo Granata, Stephanie Prigent, Human Rezaei, Concetta Giancola & Adriana Zagari. (2013) Cross-talk between prion protein and quadruplex-forming nucleic acids: a dynamic complex formation. Nucleic Acids Research 41:1, pages 327-339.
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Tsukasa Mashima, Fumiko Nishikawa, Yuji O. Kamatari, Hiromichi Fujiwara, Masayuki Saimura, Takashi Nagata, Tsutomu Kodaki, Satoshi Nishikawa, Kazuo Kuwata & Masato Katahira. (2013) Anti-prion activity of an RNA aptamer and its structural basis. Nucleic Acids Research 41:2, pages 1355-1362.
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Kaori Tsukakoshi, Koichi Abe, Koji Sode & Kazunori Ikebukuro. (2012) Selection of DNA Aptamers That Recognize α-Synuclein Oligomers Using a Competitive Screening Method. Analytical Chemistry 84:13, pages 5542-5547.
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Xiaohui JiHongxia SunHuaxi ZhouJunfeng XiangYalin TangChangqi Zhao. (2011) Research Progress of RNA Quadruplex. Nucleic Acid Therapeutics 21:3, pages 185-200.
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Xiaohui Ji, Hongxia Sun, Huaxi Zhou, Junfeng Xiang, Yalin Tang & Changqi Zhao. (2011) Research Progress of RNA Quadruplex. Oligonucleotides, pages 121102072334007.
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Ping Wang, Kristen L Hatcher, Jason C Bartz, Shu G Chen, Pamela Skinner, Juergen Richt, Hong Liu & Srinand Sreevatsan. (2011) Selection and characterization of DNA aptamers against PrP Sc . Experimental Biology and Medicine 236:4, pages 466-476.
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Gavin W. Collie & Gary N. Parkinson. (2011) The application of DNA and RNA G-quadruplexes to therapeutic medicines. Chemical Society Reviews 40:12, pages 5867.
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Subash C.B. Gopinath. (2010) Biosensing applications of surface plasmon resonance-based Biacore technology. Sensors and Actuators B: Chemical 150:2, pages 722-733.
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Anthony D. Keefe, Supriya Pai & Andrew Ellington. (2010) Aptamers as therapeutics. Nature Reviews Drug Discovery 9:7, pages 537-550.
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Latsavongsakda Sethaphong, Abhishek Singh, Ashley E. Marlowe & Yaroslava G. Yingling. (2010) The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution. The Journal of Physical Chemistry C 114:12, pages 5506-5512.
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Farid Rahimi, Kazuma Murakami, Jamie L. Summers, Chi-Hong B. Chen & Gal Bitan. (2009) RNA Aptamers Generated against Oligomeric Aβ40 Recognize Common Amyloid Aptatopes with Low Specificity but High Sensitivity. PLoS ONE 4:11, pages e7694.
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T. Mashima, A. Matsugami, F. Nishikawa, S. Nishikawa & M. Katahira. (2009) Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein. Nucleic Acids Research 37:18, pages 6249-6258.
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Fumiko NishikawaKazuyoshi MurakamiAkimasa MatsugamiMasato KatahiraSatoshi Nishikawa. (2009) Structural Studies of an RNA Aptamer Containing GGA Repeats Under Ionic Conditions Using Microchip Electrophoresis, Circular Dichroism, and 1D-NMR. Oligonucleotides 19:2, pages 179-190.
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Joshua M. Lipay & Mihaela-Rita Mihailescu. (2009) NMR spectroscopy and kinetic studies of the quadruplex forming RNA r(UGGAGGU). Molecular BioSystems 5:11, pages 1347.
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