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RNA Biology Volume 10, 2013 - Issue 6
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Research Paper

Thermozymes

Synthetic RNA thermometers based on ribozyme activity

Athanasios Saragliadis Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB); University of Konstanz; Konstanz, Germany
,
Stefanie S. Krajewski Microbial Biology; Ruhr University Bochum; Bochum, Germany
,
Charlotte Rehm Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB); University of Konstanz; Konstanz, Germany
,
Franz Narberhaus Microbial Biology; Ruhr University Bochum; Bochum, Germany
&
Jörg S. Hartig Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB); University of Konstanz; Konstanz, GermanyCorrespondence[email protected]
Pages 1009-1016 | Received 18 Mar 2013, Accepted 28 Mar 2013, Published online: 01 Apr 2013

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Adamu Yunusa Ugya, Lin Pohan, Qifeng Wang & Kamel Meguellati. (2022) Design of artificial cells: artificial biochemical systems, their thermodynamics and kinetics properties. Egyptian Journal of Basic and Applied Sciences 9:1, pages 393-412.
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Johanna Roßmanith & Franz Narberhaus. (2017) Modular arrangement of regulatory RNA elements. RNA Biology 14:3, pages 287-292.
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Prayatna Sharma, Krishnendu Mondal, Santosh Kumar, Sonia Tamang, Ishfaq Nabi Najar, Sayak Das & Nagendra Thakur. (2022) RNA thermometers in bacteria: Role in thermoregulation. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1865:7, pages 194871.
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Akanksha Sharma, Hema Kumari Alajangi, Giuseppina Pisignano, Vikas Sood, Gurpal Singh & Ravi Pratap Barnwal. (2022) RNA thermometers and other regulatory elements: Diversity and importance in bacterial pathogenesis . WIREs RNA 13:5.
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Tomasz Czerniak & James P. Saenz. (2022) Lipid membranes modulate the activity of RNA through sequence-dependent interactions. Proceedings of the National Academy of Sciences 119:4.
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Charlotte Rehm, Benedikt Klauser, Monika Finke & Jörg S. Hartig. 2021. RNA Scaffolds. RNA Scaffolds 199 212 .
Soyeon V. Park, Jae-Seong Yang, Hyesung Jo, Byunghwa Kang, Seung Soo Oh & Gyoo Yeol Jung. (2019) Catalytic RNA, ribozyme, and its applications in synthetic biology. Biotechnology Advances 37:8, pages 107452.
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Ken Kostenbader & Darrin M. York. (2019) Molecular simulations of the pistol ribozyme: unifying the interpretation of experimental data and establishing functional links with the hammerhead ribozyme. RNA 25:11, pages 1439-1456.
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Weina Ke, Enping Hong, Renata F Saito, Maria Cristina Rangel, Jian Wang, Mathias Viard, Melina Richardson, Emil F Khisamutdinov, Martin Panigaj, Nikolay V Dokholyan, Roger Chammas, Marina A Dobrovolskaia & Kirill A Afonin. (2019) RNA–DNA fibers and polygons with controlled immunorecognition activate RNAi, FRET and transcriptional regulation of NF-κB in human cells. Nucleic Acids Research 47:3, pages 1350-1361.
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Johanna Roßmanith, Mareen Weskamp & Franz Narberhaus. (2017) Design of a Temperature-Responsive Transcription Terminator. ACS Synthetic Biology 7:2, pages 613-621.
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Joana L. Rodrigues & Lígia R. Rodrigues. (2018) Potential Applications of the Escherichia coli Heat Shock Response in Synthetic Biology. Trends in Biotechnology 36:2, pages 186-198.
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Simon Ausländer, David Ausländer & Martin Fussenegger. (2017) Synthetic Biology-The Synthesis of Biology. Angewandte Chemie International Edition 56:23, pages 6396-6419.
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Simon Ausländer, David Ausländer & Martin Fussenegger. (2017) Synthetische Biologie - die Synthese der Biologie. Angewandte Chemie 129:23, pages 6494-6519.
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Michele Felletti & Jörg S. Hartig. (2017) Ligand-dependent ribozymes. Wiley Interdisciplinary Reviews: RNA 8:2, pages e1395.
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Tuhin Kumar Guha, Alvan Wai & Georg Hausner. (2017) Programmable Genome Editing Tools and their Regulation for Efficient Genome Engineering. Computational and Structural Biotechnology Journal 15, pages 146-160.
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Fatemeh Saberi, Mehdi Kamali, Ali Najafi, Alavieh Yazdanparast & Mehrdad Moosazadeh Moghaddam. (2016) Natural antisense RNAs as mRNA regulatory elements in bacteria: a review on function and applications. Cellular & Molecular Biology Letters 21:1.
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Marimuthu Citartan, Carsten A. Raabe, Chee-Hock Hoe, Timofey S. Rozhdestvensky & Thean-Hock Tang. 2016. Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria. Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria 108 114 .
Johanna Roßmanith & Franz Narberhaus. (2016) Exploring the modular nature of riboswitches and RNA thermometers. Nucleic Acids Research 44:11, pages 5410-5423.
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Juan Antonio Garcia-Martin, Ivan Dotu, Javier Fernandez-Chamorro, Gloria Lozano, Jorge Ramajo, Encarnacion Martinez-Salas & Peter Clote. (2016) RNAiFold2T: Constraint Programming design of thermo-IRES switches. Bioinformatics 32:12, pages i360-i368.
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Juan José González PlazaNataša Hulak, Zhaxybay ZhumadilovAinur Akilzhanova. (2016) Fever as an important resource for infectious diseases research. Intractable & Rare Diseases Research 5:2, pages 97-102.
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Sabine Müller, Bettina Appel, Darko Balke, Robert Hieronymus & Claudia Nübel. (2016) Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?. F1000Research 5, pages 1511.
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Allison Hoynes-O'Connor, Kristina Hinman, Lukas Kirchner & Tae Seok Moon. (2015) De novo design of heat-repressible RNA thermosensors in E. coli . Nucleic Acids Research 43:12, pages 6166-6179.
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Jennifer Frommer, Bettina Appel & Sabine Müller. (2015) Ribozymes that can be regulated by external stimuli. Current Opinion in Biotechnology 31, pages 35-41.
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Christian Berens, Florian Groher & Beatrix Suess. (2015) RNA aptamers as genetic control devices: The potential of riboswitches as synthetic elements for regulating gene expression. Biotechnology Journal 10:2, pages 246-257.
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Benedikt Klauser, Charlotte Rehm, Daniel Summerer & Jörg S. Hartig. 2015. Riboswitches as Targets and Tools. Riboswitches as Targets and Tools 301 320 .
Sven Findeiß, Manja Wachsmuth, Mario Mörl & Peter F. Stadler. 2015. Riboswitches as Targets and Tools. Riboswitches as Targets and Tools 1 22 .
Charlotte Rehm, Benedikt Klauser & Jörg S. Hartig. 2015. RNA Scaffolds. RNA Scaffolds 127 140 .
Ivan Dotu, Juan Antonio Garcia-Martin, Betty L. Slinger, Vinodh Mechery, Michelle M. Meyer & Peter Clote. (2014) Complete RNA inverse folding: computational design of functional hammerhead ribozymes. Nucleic Acids Research 42:18, pages 11752-11762.
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Florian Groher & Beatrix Suess. (2014) Synthetic riboswitches — A tool comes of age. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1839:10, pages 964-973.
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Stefanie Sandra Krajewski & Franz Narberhaus. (2014) Temperature-driven differential gene expression by RNA thermosensors. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1839:10, pages 978-988.
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