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Divergent RNA transcription

A role in promoter unwinding?

Catherine Naughton MRC Human Genetics Unit; Institute of Genetics and Molecular Medicine; The University of Edinburgh; Edinburgh, UK
,
Samuel Corless MRC Human Genetics Unit; Institute of Genetics and Molecular Medicine; The University of Edinburgh; Edinburgh, UK
&
Nick Gilbert MRC Human Genetics Unit; Institute of Genetics and Molecular Medicine; The University of Edinburgh; Edinburgh, UKCorrespondence[email protected]
Pages 162-166 | Received 15 May 2013, Accepted 25 Jun 2013, Published online: 25 Jul 2013

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Rajiv Kumar Jha, David Levens & Fedor Kouzine. (2022) Mechanical determinants of chromatin topology and gene expression. Nucleus 13:1, pages 95-116.
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Heta P. Patel, Stefano Coppola, Wim Pomp, Umberto Aiello, Ineke Brouwer, Domenico Libri & Tineke L. Lenstra. (2023) DNA supercoiling restricts the transcriptional bursting of neighboring eukaryotic genes. Molecular Cell 83:10, pages 1573-1587.e8.
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Yves Pommier, André Nussenzweig, Shunichi Takeda & Caroline Austin. (2022) Human topoisomerases and their roles in genome stability and organization. Nature Reviews Molecular Cell Biology 23:6, pages 407-427.
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Charles J. Dorman & Niamh Ní Bhriain. (2020) CRISPR-Cas, DNA Supercoiling, and Nucleoid-Associated Proteins. Trends in Microbiology 28:1, pages 19-27.
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Charles J. Dorman. (2019) DNA supercoiling and transcription in bacteria: a two-way street. BMC Molecular and Cell Biology 20:1.
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Sangjin Kim, Bruno Beltran, Irnov Irnov & Christine Jacobs-Wagner. (2019) Long-Distance Cooperative and Antagonistic RNA Polymerase Dynamics via DNA Supercoiling. Cell 179:1, pages 106-119.e16.
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Bilal El Houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon & Sam Meyer. (2019) Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling. Nucleic Acids Research 47:11, pages 5648-5657.
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Keerthi T. Chathoth & Nicolae Radu Zabet. (2019) Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome . Genome Research 29:4, pages 613-625.
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Anna Reymer, Krystyna Zakrzewska & Richard Lavery. (2018) Sequence-dependent response of DNA to torsional stress: a potential biological regulation mechanism. Nucleic Acids Research 46:4, pages 1684-1694.
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Samuel Corless & Nick Gilbert. (2017) Investigating DNA supercoiling in eukaryotic genomes. Briefings in Functional Genomics 16:6, pages 379-389.
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Samuel Corless & Nick Gilbert. (2016) Effects of DNA supercoiling on chromatin architecture. Biophysical Reviews 8:S1, pages 51-64.
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Agnes Noy, Thana Sutthibutpong & Sarah A. Harris. (2016) Protein/DNA interactions in complex DNA topologies: expect the unexpected. Biophysical Reviews 8:S1, pages 145-155.
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Charles J. Dorman & Matthew J. Dorman. (2016) DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression. Biophysical Reviews 8:S1, pages 89-100.
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Samuel Corless & Nick Gilbert. (2016) Effects of DNA supercoiling on chromatin architecture. Biophysical Reviews 8:3, pages 245-258.
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Agnes Noy, Thana Sutthibutpong & Sarah A. Harris. (2016) Protein/DNA interactions in complex DNA topologies: expect the unexpected. Biophysical Reviews 8:3, pages 233-243.
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Charles J. Dorman & Matthew J. Dorman. (2016) DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression. Biophysical Reviews 8:3, pages 209-220.
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C.?A. Brackley, J. Johnson, A. Bentivoglio, S. Corless, N. Gilbert, G. Gonnella & D. Marenduzzo. (2016) Stochastic Model of Supercoiling-Dependent Transcription. Physical Review Letters 117:1.
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Patrick Sobetzko. (2016) Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes. Nucleic Acids Research 44:4, pages 1514-1524.
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Jane Mellor, Ronja Woloszczuk & Françoise S. Howe. (2016) The Interleaved Genome. Trends in Genetics 32:1, pages 57-71.
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Thana SutthibutpongSarah A. HarrisAgnes Noy. (2015) Comparison of Molecular Contours for Measuring Writhe in Atomistic Supercoiled DNA. Journal of Chemical Theory and Computation 11:6, pages 2768-2775.
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Veneta Gerganova, Sebastian Maurer, Liubov Stoliar, Aleksandre Japaridze, Giovanni Dietler, William Nasser, Tamara Kutateladze, Andrew Travers & Georgi Muskhelishvili. (2015) Upstream Binding of Idling RNA Polymerase Modulates Transcription Initiation from a Nearby Promoter. Journal of Biological Chemistry 290:13, pages 8095-8109.
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Loy E. Volkman. (2015) Baculoviruses and nucleosome management. Virology 476, pages 257-263.
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Sam Meyer & Guillaume Beslon. (2014) Torsion-Mediated Interaction between Adjacent Genes. PLoS Computational Biology 10:9, pages e1003785.
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