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Transcription Volume 5, 2014 - Issue 1: Special Focus Issue on In Vitro Transcription
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Review

Transcription elongation

Heterogeneous tracking of RNA polymerase and its biological implications

Masahiko Imashimizu Center for Cancer Research; National Cancer Institute; Frederick, MD USA
,
Nobuo Shimamoto Faculty of Life Sciences; Kyoto Sangyo University; Kamigamo-Motoyama; Kita-Ku, Kyoto Japan
,
Taku Oshima Graduate School of Biological Sciences; Nara Institute of Science and Technology; Takayama, Ikoma, Nara, Japan
&
Mikhail Kashlev Center for Cancer Research; National Cancer Institute; Frederick, MD USACorrespondence[email protected]
Article: e28285 | Received 24 Dec 2013, Accepted 18 Feb 2014, Published online: 21 Feb 2014

Citations (18)

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Read on this site (3)

Masahiko Imashimizu & David B. Lukatsky. (2018) Transcription pausing: biological significance of thermal fluctuations biased by repetitive genomic sequences. Transcription 9:3, pages 196-203.
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Yuri A. Nedialkov, Kristopher Opron, Hailey L. Caudill, Fadi Assaf, Amanda J. Anderson, Robert I. Cukier, Guowei Wei & Zachary F. Burton. (2018) Hinge action versus grip in translocation by RNA polymerase. Transcription 9:1, pages 1-16.
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Liang Xu, Wei Wang, Jenny Chong, Ji Hyun Shin, Jun Xu & Dong Wang. (2015) RNA polymerase II transcriptional fidelity control and its functional interplay with DNA modifications. Critical Reviews in Biochemistry and Molecular Biology 50:6, pages 503-519.
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Articles from other publishers (15)

Martyna Gajos, Olga Jasnovidova, Alena van Bömmel, Susanne Freier, Martin Vingron & Andreas Mayer. (2021) Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research 49:8, pages 4402-4420.
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Nikita Fernandes & J. Ross Buchan. (2021) RNAs as Regulators of Cellular Matchmaking. Frontiers in Molecular Biosciences 8.
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Masahiko Imashimizu, Masahito Tanaka & Hiromichi Hoshina. (2020) Gre factors prevent thermal and mechanical stresses induced by terahertz irradiation during transcription. Genes to Cells 26:2, pages 56-64.
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Masahiko Imashimizu, Yuji Tokunaga, Ariel Afek, Hiroki Takahashi, Nobuo Shimamoto & David B. Lukatsky. (2020) Control of Transcription Initiation by Biased Thermal Fluctuations on Repetitive Genomic Sequences. Biomolecules 10:9, pages 1299.
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Maria PuiuChristina Julius. (2019) Bacteriophage gene products as potential antimicrobials against tuberculosis. Biochemical Society Transactions 47:3, pages 847-860.
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Masahiko Imashimizu, Maria L. Kireeva, Lucyna Lubkowska, Mikhail Kashlev & Nobuo Shimamoto. (2019) The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase. Journal of Molecular Biology 431:14, pages 2528-2542.
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Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, María Carmen Mirón-García, Victoria Begley, Antonio Fernández-Pévida, Jesús de la Cruz, Sebastián Chávez & Francisco Navarro. (2018) Rpb5 modulates the RNA polymerase II transition from initiation to elongation by influencing Spt5 association and backtracking. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861:1, pages 1-13.
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Natalia Gómez-Navarro, Lorena Peiró-Chova & Francisco Estruch. (2017) Iwr1 facilitates RNA polymerase II dynamics during transcription elongation. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1860:7, pages 803-811.
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Andreas Mayer, Heather M Landry & L Stirling Churchman. (2017) Pause & go: from the discovery of RNA polymerase pausing to its functional implications. Current Opinion in Cell Biology 46, pages 72-80.
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Masahiko ImashimizuAriel AfekHiroki Takahashi, Lucyna LubkowskaDavid B. Lukatsky. (2016) Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences. Proceedings of the National Academy of Sciences 113:47.
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Jookyung Lee & Sergei Borukhov. (2016) Bacterial RNA Polymerase-DNA Interaction?The Driving Force of Gene Expression and the Target for Drug Action. Frontiers in Molecular Biosciences 3.
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Masahiko Imashimizu, Hiroki Takahashi, Taku Oshima, Carl McIntosh, Mikhail Bubunenko, Donald L. Court & Mikhail Kashlev. (2015) Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo. Genome Biology 16:1.
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Katsuhiko Murakami. (2015) Structural Biology of Bacterial RNA Polymerase. Biomolecules 5:2, pages 848-864.
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Christophe PennoVirag SharmaArthur CoakleyMary O’Connell MotherwayDouwe van SinderenLucyna Lubkowska, Maria L. Kireeva, Mikhail Kashlev, Pavel V. BaranovJohn F. Atkins. (2015) Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators. Proceedings of the National Academy of Sciences 112:16.
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Masahiko Imashimizu & Mikhail Kashlev. (2014) Unveiling translocation intermediates of RNA polymerase. Proceedings of the National Academy of Sciences 111:21, pages 7507-7508.
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