Biophysical and molecular modeling evidences for the binding of sulfa molecules with hemoglobin

Abstract

The molecular mechanism of the heme protein, hemoglobin (Hb) interaction with sulfa molecule, sulfadiazine (SDZ) has been investigated through spectroscopic, neutron scattering and molecular modeling techniques. Absorption and emission spectroscopic studies showed that SDZ molecules were bound to Hb protein, non-cooperatively. The binding affinityof SDZ-Hb complex at standard experimental condition was evaluated to be around (4.2 ± 0.07) ×10⁴, M⁻¹with 1:1 stoichiometry. Drug induced structural perturbation of the 3 D protein moiety was confirmed through circular dichroism (CD), synchronous fluorescence and small angle neutron scattering methods. From the temperature dependent spectrofluorometric studies, the negative standard molar Gibbs energy change suggested the spontaneity of the reaction. The negative enthalpy and positive entropy change(s) indicated towards the involvement of both electrostatic and hydrophobic forces during the association process. Salt dependent fluorescence study revealed major contributions from non-poly-electrolytic forces. Molecular modeling studies determined the probable binding sites, types of interaction involved and the conformational alteration of the compactness of the Hb structure upon interaction with SDZ molecule. Overall, the study provides detailed insights into the binding mechanism of SDZ antibiotics to Hb protein.

Communicated by Ramaswamy H. Sarma

Keywords:

• Protein-ligand interaction
• effect of antibiotic
• binding interaction
• structure-function relationship
• thermodynamics

Disclosure statement

The authors declare no competing financial interest.

Additional information

Funding

AM is thankful for DST Women Scientist Award Grant (DST/WOS-A/CS-83/2019), Govt. of India. JB acknowledges the financial supports from UGC-DAE, Mumbai Center, BARC, Mumbai (CRS-266);DBT Twinning Research Scheme (BT/PR25026/NER/95/963/2017) Govt. of India and TEQIP-III Seed Grant, NIT Nagaland.