Binding of human serum albumin with uranyl ion at various pH: an all atom molecular dynamics study

Abstract

Uranium is routinely handled in various stages of nuclear fuel cycle and its association with human serum albumin (HSA) has been reported in literature, however, their binding characteristics still remains obscure. The present study aims to understand interaction of uranium with HSA by employing all atom molecular dynamics simulation of the HSA-metal ion complex. His67, His247 and Asp249 residues constitute the major binding site of HSA, which capture the uranyl ion (UO₂²⁺). A total of six sets of initial coordinates are used for Zn²⁺-HSA and UO₂²⁺-HSA system at pH = 4, 7.4 and 9, respectively. Enhance sampling method, namely, well-tempered meta-dynamics (WT-MtD) is employed to study the binding and un-binding processes of UO₂²⁺ and Zn²⁺ ions. Potential of mean force (PMF) profiles are generated for all the six sets of complexes from the converged WT-MtD run. Various basins and barriers are observed along the (un)binding pathways. Hydrogen bond dynamics and short-range Coulomb interactions are evaluated from the equilibrium run at each basins and barriers for both the ions at all pH values. The binding of UO₂²⁺ ion with HSA is the result of the dynamical balance between UO₂²⁺-HSA and UO₂²⁺-water short range Coulomb interactions. Zn²⁺ ion interact more strongly than UO₂²⁺ at all pH through short range Coulomb interactions. PMF values further concludes that UO₂²⁺ cannot associate to the Zn²⁺ bound HSA protein but can be captured by free HSA at all pH values i.e. endosomal, alkaline and physiological pH.

Communicated by Ramaswamy H. Sarma

Keywords:

• Uranyl ion
• human serum albumin
• enhanced sampling method
• meta-dynamics
• hydrogen bond

Acknowledgements

Prof(s). A. K. Tyagi is gratefully acknowledged for encouragement during the course of the work. VM is grateful to Dr Pramilla Sawant and Shri Probal Choudhary for their continuous support and encouragement. BARC computer centre is also acknowledged for providing ANUPAM computational facility.

Disclosure statement

The authors declare no conflict of interest.

Additional information

Funding

The work was supported by DAE under project RBA4013.