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SPECIAL SECTION: CHEMICAL AND BIOLOGICAL WARFARE

Developments in systems biology: implications for health and biochemical security

Pages 459-473 | Published online: 05 Feb 2021
 

Abstract

Biological processes occur within complex, vital physiological systems. Systems biology seeks to understand how physiological systems function as a whole, integrating information about interactions in a biological system through computer-assisted modeling, aiming to identify relationships not found within individual biological units. Coupled with advances in the life sciences and computing power, this research is yielding an enormous amount of information about specific targets of vital physiological processes, and enabling predictions about how these targets may respond to a disturbance or change in signaling. This information can be greatly beneficial in treating complex diseases. It also has extended the spectrum of potential threat agents to include bioregulators, which to a great extent regulate the functioning of the nervous, endocrine, and immune systems. There is potential for misuse of the knowledge gained from these studies, and improved methods of targeted delivery of biochemicals make them more feasible weapons agents. Moreover, biochemical security concerns in systems biology are embedded within the larger domain of cyberbiosecurity. There remains a need for proactive approaches to the formulation of biochemical-security-oversight policy that would encompass developments at this interface of the life sciences and information technology.

Notes

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2 Anil Kumar, Rajesh Kumar Pathak, Sanjay Mohan Gupta, Vikram Singh Gaur, and Dinesh Pandey, “Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability,” OMICS: A Journal of Integrative Biology, Vol. 19, No. 10 (2015), pp. 581–601.

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4 Jason McDermott, Ram Samudrala, Roger E. Bumgarner, Krista Montgomery, and Renee Ireton, eds., Computational Systems Biology (New York: Humana Press, 2009), p. v; Stephen Naylor and Jake Y. Chen, “Unraveling Human Complexity and Disease with Systems Biology and Personalized Medicine,” Personalized Medicine, Vol. 7, No. 3 (2010), pp. 275–89.

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6 Bioregulators in general are molecules that steer or modulate vital physiological processes in the body. The bioregulators of relevance for the discussion here are biochemicals produced by the body to steer vital processes in the nervous system (neuropeptides, neurotransmitters such as adrenaline, dopamine), the endocrine system (hormones such as insulin, endorphins, cortisol), and the immune system (cytokines such as IL-1, IL-4, etc.). When produced in optimal amounts, bioregulators ensure the proper functioning of these processes. When they are over- or under-produced, serious dysfunction can occur.

7 Chia-Chou Wu and Bor-Sen Chen, “Coordination of Defensive and Offensive Molecular Mechanisms in the Innate and Adaptive Host–Pathogen Interaction Networks,” PLoS ONE, Vol. 11, No. 2 (2016), p. 20; Daniel E. Zak and Alan Aderem, “Systems Biology of Innate Immunity,” Immunological Reviews, Vol. 227, No. 1 (2009), pp. 264–82.

8 In general, cytokines are biochemical components functioning as messengers of the immune system, promoting various functions of immune cells. Macrophages, for example, produce cytokines that promote inflammation. As long as the production is optimal, these cytokines help in the healing process after injury or infection. If, however, the production is too heavy (such as with the cytokine storm seen in some Covid-19 infections), the inflammation can be damaging.

9 Zak and Aderem, “Systems Biology of Innate Immunity.”

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18 Reviewed in Huile Gao, “Progress and Perspectives on Targeting Nanoparticles for Brain Drug Delivery,” Acta Pharmaceutica Sinica B, Vol. 6 (2016), pp. 268–86.

19 Erickson and Banks, “Neuroimmune Axes of the Blood–Brain Barriers and Blood–Brain Interfaces,” pp. 289–91.

20 Adrenergic agents are substances that stimulate nerves in the sympathetic nervous system. Examples are adrenaline and the similar neurotransmitter noradrenaline. While adrenaline has more effect on the heart, noradrenaline has more effect on blood vessels.

21 Discussed in Straub et al., “Dialogue Between the CNS and the Immune System in Lymphoid Organs,” p. 409.

22 Kathryn Nixdorff, “Advances in the Targeted Delivery of Biochemical Agents,” in Michael Crowley, Malcolm R. Dando, and Lijun Shang, eds., Preventing Chemical Weapons: Arms Control and Disarmament as the Sciences Converge (London: Royal Society of Chemistry, 2018), pp. 259–91.

23 US Department of Defense, “The Military Critical Technologies List, Part II. Weapons of Mass Destruction Technologies,” Vol. 2, 1988, p. II-3-1, <http://fas.org/irp/threat/mctl98-2/mctl98-2.pdf>.

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26 Reviewed in Jeffrey L. Lochhead and Robert G. Thorne, “Intranasal Delivery of Biologics to the Central Nervous System,” Advanced Drug Delivery Reviews, Vol. 64 (2012), pp. 614–28.

27 Gao, “Progress and Perspectives on Targeting Nanoparticles for Brain Drug Delivery,” pp. 269–71.

28 Ibid.

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33 The acronym stands for “Clustered Regularly Interspaced Short Palindrome Repeats [CRISPR]/CRISPR-associated [Cas] endonuclease.” See also Jennifer A. Doudna and Emmanuelle Charpentier, “The New Frontier of Genome Engineering with CRISPR-Cas9,” Science, Vol. 346 (2014), pp. 1258096-1–9, <https://science.sciencemag.org/content/346/6213/1258096>.

34 Jason B. Miller, Shuyuan Zhang, Petra Kos, Hu Xiong, Kejin Zhou, Sofya S. Perelman, Hao Zhu, and Daniel J. Siegwart, “Non-viral CRISPR/Cas Gene Editing in Vitro and in Vivo Enabled by Synthetic Nanoparticle Co-delivery of Cas9 mRNA and sgRNA,” Angewandte Chemie, International Edition, Vol. 56 (2017), pp. 1059–63.

35 Joseph T. Buchman, Natalie V. Hudson-Smith, Kaitlin M. Landy, and Christy L. Hay, “Understanding Nanoparticle Toxicity Mechanisms to Inform Redesign Strategies to Reduce Environmental Impact,” Accounts of Chemical Research, Vol. 52 (2019), pp. 1632–42.

36 Ji Liu, Jin Chang, Ying Jiang, Xiandi Meng, Tianmeng Sun, Lanqun Mao, Qiaobing Xu, and Ming Wang, “Fast and Efficient CRISPR/Cas9 Genome Editing in Vivo Enabled by Bioreducible Lipid and Messenger RNA Nanoparticles,” Advanced Materials, Vol. 31, Article 1902575 (2019); Asha Kumari Patel, James C. Kaczmarek, Suman Bose, Kevin J. Kauffman, Faryal Mir, Michael W. Heartlein, Frank DeRosa, Robert Langer, and Daniel G. Anderson, “Inhaled Nanoformulated mRNA Polyplexes for Protein Production in Lung Epithelium,” Advanced Materials, Vol. 31, Article 1805116 (2019).

37 Nixdorff, “Advances in the Targeted Delivery of Biochemical Agents,” p. 275.

38 Christopher Larson, Bryan Oronsky, Jan Scicinski, Gary R. Fanger, Meaghan Stirn, Arnold Oronsky, and Tony R. Reid, “Going Viral: A Review of Replication-Selective Oncolytic Adenoviruses,” Oncotarget, Vol. 6, No. 24 (2015), pp. 19976–89.

39 Chen Ling, Baozheng Li, Wenqin Ma, and Arun Srivastava, “Development of Optimized AAV Serotype Vectors for High-Efficiency Transduction at Further Reduced Doses,” Human Gene Therapy Methods, Vol. 27, No. 24 (2016), pp. 143–49.

40 Many cells in the adult body are in the final stage of differentiation or development and do not divide further. Non-dividing cells are more resistant to gene-transfer processes than are cells that are dividing.

41 Cecilia Frecha, Judit Szecsi, Francois-Loic Cosset, and Els Verhoeyen, “Strategies for Targeting Lentiviral Vectors,” Current Gene Therapy, Vol. 8 (2008), pp. 449–60.

42 Hanna Kymäläinen, J. Uwe Appelt, Frank A. Giordano, Angela F. Davies, Caroline M. Ogilvie, Sherif G. Ahmed, Stephanie Laufs, Manfred Schmidt, Juergen Bode, Rafael J. Yanez-Munoz, and George Dickson, “Long-Term Episomal Transgene Expression from Mitotically Stable Integration-Deficient Lentiviral Vectors,” Human Gene Therapy, Vol. 25 (2014), pp. 428–42.

43 Youdiil Ophinni, Mari Inoue, Tomohiro Kotaki, and Masanori Kameoka, “CRISPR/Cas9 System Targeting Regulatory Genes of HIV-1 Inhibits Viral Replication in Infected T-cell Cultures,” Scientific Reports, Vol. 8, Article 7784 (2018).

44 Beth L. Laube, “Aerosolized Medications for Gene and Peptide Therapy,” Respiratory Care, Vol. 60, No. 6 (2015), pp. 806–24.

45 Angela Abruzzo, Giampaolo Zuccheri, Federica Belluti, Simona Provenzano, Laura Verardi, Federica Bigucci, Teresa Cerchiara, Barbara Luppi, and Natalia Calonghi, “Chitosan Nanoparticles for Lipophilic Anticancer Drug Delivery: Development, Characterization and in Vitro Studies on HT29 Cancer Cells,” Colloids and Surfaces B: Biointerfaces, Vol. 145 (2016), pp. 362–72; Piyanuch Wonganan and Maria A. Croyle, “PEGylated Adenoviruses: From Mice to Monkeys,” Viruses, Vol. 2 (2010), pp. 468–502.

46 Leonard A. Cole, “Open-Air Biowarfare Testing and the Evolution of Values,” Health Security, Vol. 14, No. 5 (2016), pp. 315–22.

47 Kathryn Nixdorff, Tatiana Borisova, Serhiy Komisarenko, and Malcolm Dando, “Dual-Use Nano-neurotechnology: An Assessment of the Implications of Trends in Science and Technology,” Politics and the Life Sciences, Vol. 37, No. 2 (2018), pp. 180–202.

48 Elliot Kagan, “Bioregulators as Instruments of Terror,” Clinics in Laboratory Medicine, Vol. 21, No. 3 (2001), pp. 607–18; Malcolm Dando, “Genomics, Bioregulators, Cell Receptors and Potential Biological Weapons,” Defense Analysis, Vol. 17, No. 3 (2001), pp. 239–57; Mark Wheelis, “Biotechnology and Biochemical Weapons,” Nonproliferation Review, Vol. 9 (2002), pp. 48–53.

49 National Research Council, Globalization, Biosecurity, and the Future of the Life Sciences (Washington, DC: National Academies Press, 2006).

50 National Research Council, Biotechnology Research in an Age of Terrorism (Washington, DC: National Academies Press).

51 Kathleen M. Vogel, “Framing Biosecurity: An Alternative to the Biotech Revolution Model?” Science and Public Policy, Vol. 35, No. 1 (2008), pp. 45–54.

52 Sonia Ben Ouagrham-Gormley and Kathleen M. Vogel, “The Social Context Shaping Bioweapons (Non)proliferation,” Biosecurity and Bioterrorism: Biodefense Strategy, Practice, and Science, Vol. 8, No. 1 (2010), pp. 9–24.

53 Raymond A. Zilinskas, The Soviet Biological Weapons Program and Its Legacy in Today’s Russia (Washington, DC: National Defense University Press, 2016), <https://ndupress.ndu.edu/Portals/68/Documents/occasional/cswmd/CSWMD_OccasionalPaper-11.pdf?ver=2016-07-18-144946-743>; Milton Leitenberg and Raymond A. Zilinskas, The Soviet Biological Weapons Program: A History (Cambridge, MA: Harvard University Press, 2012).

54 Lauren C. Richardson, Nancy D. Connell, Stephen M. Lewis, Eleonore Pauwels, and Randy S. Murch, “Cyberbiosecurity: A Call for Cooperation in a New Threat Landscape,” Frontiers in Bioengineering and Biotechnology, Vol. 7, Article 99 (2019).

55 Ibid.

56 Brian Rappert, “A Teachable Moment for Biological Weapons: The Seventh BWC Review Conference and the Need for International Cooperation in Education,” Bulletin of the Atomic Scientists, Vol. 67, No. 3 (2011), pp. 44–49.

57 Lauren C. Richardson, Stephen M. Lewis, and Ryan N. Burnett, “Building Capacity for Cyberbiosecurity Training,” Frontiers in Bioengineering and Biotechnology, Vol. 7, Article 112 (2018), p. 5.

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