Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon

Figures & data

Table 1 Number of SaV reads and percentages of total number of non-phage viral reads

Pool	Sex	Age	Location	# non-phage viral reads	# of sapovirus reads	% SaV reads	Other viruses in the pool
P1^a	M	Adult	Lysoka	7068	250	3.5	2, 9 and 12
P2	M	Adult	Lysoka	71955	625	0.9	1, 9 and 11
P3	F	Adult	Lysoka	81322	75	0.1	9 and 14
P4	F	Adult	Lysoka	72953	0	0.0	4, 6, 7, 9, 12 and 15
P5	M	Adult	Moyuka	1206	0	0.0	8, 9, and 16
P6	F	Adult	Moyuka	450	0	0.0	9
P7	M	Adult	Limbe	7156	0	0.0	4, 9, 11, 14 and 15
P8	M	Adult	Limbe	52278	570	1.1	11, 14 and 15
P9	F	Adult	Limbe	20866	224	1.1	2 and 4
P10	F	Adult	Limbe	46295	56	0.1	2, 4, 6, 11 and 15
P11^a	M	Young	Limbe	60856	3827	6.3	4, 6 and 15
P12	M	Young	Limbe	787	0	0.0	2, 4, 6, 11 and 15
P13	M	Young	Limbe	2016	0	0.0	4, 6 and 15
P14^a	F	Young	Limbe	50567	452	0.9	2, 3, 12 and 17
P14^b	F	Young	Limbe	188953	14068	7.4	2, 3, 12 and 17
P15	F	Young	Limbe	108240	42	0.0	3, 12, 15 and 17
P16^c	F	Adult	Lysoka	110542	0	0.0	3 and 9
P17^a	F	Adult	Lysoka	217016	471	0.2	9, 11 and 14
P18	F	Adult	Lysoka	1370	0	0.0	9, 11, 14, 16 and 17
P19	F	Adult	Moyuka	2569	0	0.0	9, 11, 12, 14 and 17
P20	F	Adult	Limbe	609	0	0.0	4, 6, 11, 14, 15, and 17
P21	F	Adult	Limbe	2923	0	0.0	4, 6, 11, 14, 15 and 17
P22^d	F	Young	Limbe	568732	7295	1.3	2 and 17
P23^a	M	Adult	Limbe	620965	2563	0.4	4
P24	M	Young	Limbe	1853	84	4.5	1, 2, 3, 5, 11, 14, 15 and 17
P25	F	Adult	Limbe	15355	0	0.0	3, 4, 8, 11, 14, 15 and 17

Abbreviations: next-generation sequencing, NGS; sapovirus, SaV.

^aPool from which SaV reads were described.

^bPool on which NGS was repeated after pretreatment of the extracted viral nucleic acids with DNsase to obtain a relative enrichment of RNA virus (sapovirus) reads.

^cPool of samples from Epomophorus gambianus, no SaV reads. Other viruses are presented with numbers from 1 to 17 as follows: 1=Astroviridae, 2=Caliciviridae, 3=Circoviridae, 4=Coronaviridae, 5=Hepeviridae, 6=Herpesviridae, 7=Nodaviridae, 8=Papillomaviridae, 9=Partitiviridae, 10=Paramyxoviridae, 11=Parvoviridae, 12=Picobirnaviridae, 14=Reoviridae, 15=Retroviridae, 16=Totiviridae, 17=Tymovirales.

^dPool with two sapovirus strains.

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