1,049
Views
3
CrossRef citations to date
0
Altmetric
Correspondence

Biodiversity of rodent anelloviruses in China

, , , , , , , , , , ORCID Icon, , , , & show all
Pages 1-3 | Received 24 Oct 2017, Accepted 14 Jan 2018, Published online: 21 Mar 2018

Figures & data

Fig. 1 a Anellovirus-positive pool samples of rodents in China. Blank spaces represent absent samples. The black frames represent anellovirus negativity, and dark shading represents anellovirus positivity in each species and province. b Combined phylogenetic trees for anelloviruses and rodent hosts. The anellovirus phylogenetic tree based on the complete ORF1 protein sequences was constructed using MEGA6 with the mtREV + F + G + I model after alignment with the MUSCLE package, with 1000 bootstrap replicates. The rodent phylogenetic tree based on mitochondrial-cyt b was drawn from genus to family according to previous reportsCitation12. The viruses found in the current study are indicated by red circles (

). RoTTV1, RoTTV2, and RoTTV-like are indicated by red triangles (
). Text and box color demarcations represent different genera of Anelloviridae and different families of Rodentia, respectively. The colors of these lines represent different RoTTV clusters

Fig. 1 a Anellovirus-positive pool samples of rodents in China. Blank spaces represent absent samples. The black frames represent anellovirus negativity, and dark shading represents anellovirus positivity in each species and province. b Combined phylogenetic trees for anelloviruses and rodent hosts. The anellovirus phylogenetic tree based on the complete ORF1 protein sequences was constructed using MEGA6 with the mtREV + F + G + I model after alignment with the MUSCLE package, with 1000 bootstrap replicates. The rodent phylogenetic tree based on mitochondrial-cyt b was drawn from genus to family according to previous reportsCitation12. The viruses found in the current study are indicated by red circles (Display full size). RoTTV1, RoTTV2, and RoTTV-like are indicated by red triangles (Display full size). Text and box color demarcations represent different genera of Anelloviridae and different families of Rodentia, respectively. The colors of these lines represent different RoTTV clusters
Supplemental material

Supplementary Table S1(XLSX 9 kb)

Download MS Excel (9.9 KB)

Supplementary Table S2(XLSX 30 kb)

Download MS Excel (30.3 KB)