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Original Articles

DNA methylation analysis of exon-1 of the ovine HOXC-8 gene in Mongolian sheep using bisulphite sequencing

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Pages 198-202 | Received 17 Jul 2011, Accepted 12 Jan 2012, Published online: 27 Feb 2012

Figures & data

Figure 1.  Schematic representation of the bisulphite PCR technique. Cytosines (C) but not methylated cytosines (Cm) are deaminated to U by bisulphite, under appropriate conditions (Hayatsu Citation2008). When clones derived from PCR-amplified bisulphite-treated DNA were sequenced, the only cytosines present in the sequence represent those that were methylated in the original sample: all other cytosines were converted to thymine.

Figure 1.  Schematic representation of the bisulphite PCR technique. Cytosines (C) but not methylated cytosines (Cm) are deaminated to U by bisulphite, under appropriate conditions (Hayatsu Citation2008). When clones derived from PCR-amplified bisulphite-treated DNA were sequenced, the only cytosines present in the sequence represent those that were methylated in the original sample: all other cytosines were converted to thymine.

Figure 2.  The results of searching for CpG Islands in exon-1 of the HOXC-8 gene. The CpG Island is located at 48–373 bp. Five pairs of primers for bisulphite sequencing PCR are also shown.

Figure 2.  The results of searching for CpG Islands in exon-1 of the HOXC-8 gene. The CpG Island is located at 48–373 bp. Five pairs of primers for bisulphite sequencing PCR are also shown.

Figure 3.  The schematic diagram of HOXC-8 and the region amplified by Bisulphite-PCR. (A) The schematic diagram of the HOXC-8 gene of Mongolian sheep. (B) A 293 bp region in exon-1 of the HOXC-8 gene amplified by Bisulphite-PCRs. The CpG sites in exon-1 of the HOXC-8 gene of Mongolian sheep (GenBank Accession No. EU817489) are marked in italics and numbered. The primer is underlined.

Figure 3.  The schematic diagram of HOXC-8 and the region amplified by Bisulphite-PCR. (A) The schematic diagram of the HOXC-8 gene of Mongolian sheep. (B) A 293 bp region in exon-1 of the HOXC-8 gene amplified by Bisulphite-PCRs. The CpG sites in exon-1 of the HOXC-8 gene of Mongolian sheep (GenBank Accession No. EU817489) are marked in italics and numbered. The primer is underlined.

Figure 4.  Methylation profiles of CpG dinucleotides of exon-1 of the HOXC-8 gene in normal Mongolian sheep (N) and multi-vertebrae Mongolian sheep (T). Open and closed circles indicate non-methylated and methylated CpG sites, respectively.

Figure 4.  Methylation profiles of CpG dinucleotides of exon-1 of the HOXC-8 gene in normal Mongolian sheep (N) and multi-vertebrae Mongolian sheep (T). Open and closed circles indicate non-methylated and methylated CpG sites, respectively.

Figure 5.  The average percentages of methylated DNA in HOXC-8 exon-1 in normal and multi-vertebrae Mongolian sheep.

Figure 5.  The average percentages of methylated DNA in HOXC-8 exon-1 in normal and multi-vertebrae Mongolian sheep.

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