Figures & data
TABLE 1 Composition and properties of serum-free media formulations used in experiments. ITS: insulin-transferrin-selenium supplement. Medium pH and osmolarity are expressed as the average ± standard deviation of three samples equilibrated for several hours in a 37 °C incubator with 5% CO2
Figure 1 Composite images of immunofluorescent staining for pimonidazole adducts, counterstained with DAPI. (A) NRVM monolayers cultured in a standard incubator, 400× mag; (B) NRVM monolayers cultured in 0% oxygen gas, 400× mag; periphery region of EHT gel shown at (C) 100× mag and (D) 200× mag. Bars represent pimonidazole staining front after 4 hrs, as measured from edge of section between EHTs formulated with 5 (low), 10 (medium), or 15× 106 cells/mL (high) initially (* p < 0.05 vs. other samples, n = 12).
![Figure 1 Composite images of immunofluorescent staining for pimonidazole adducts, counterstained with DAPI. (A) NRVM monolayers cultured in a standard incubator, 400× mag; (B) NRVM monolayers cultured in 0% oxygen gas, 400× mag; periphery region of EHT gel shown at (C) 100× mag and (D) 200× mag. Bars represent pimonidazole staining front after 4 hrs, as measured from edge of section between EHTs formulated with 5 (low), 10 (medium), or 15× 106 cells/mL (high) initially (* p < 0.05 vs. other samples, n = 12).](/cms/asset/c24edf26-58ec-4e0a-9033-fa605f79ba3e/ianb19_a_293375_uf0001_b.gif)
Figure 2 Acidosis is a function of oxygen concentration in NRVM monolayer cultures. Culture media pH was measured over time in NRVMs (n = 3) plated at medium density (5× 104 cells/cm2) in 0%, 10%, and ambient air (20%) dry gas O2 fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.
![Figure 2 Acidosis is a function of oxygen concentration in NRVM monolayer cultures. Culture media pH was measured over time in NRVMs (n = 3) plated at medium density (5× 104 cells/cm2) in 0%, 10%, and ambient air (20%) dry gas O2 fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.](/cms/asset/79bdfe6f-560e-41ce-8c65-2121b59ebeda/ianb19_a_293375_uf0002_b.gif)
Figure 3 Acidosis is a function of cell density in NRVM monolayers. Culture media pH was measured over time in NRVMs plated at 3 initial densities (3, 5 or 7 × 104 cells/cm2) in 0% and ambient air (20%) dry gas oxygen fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.
![Figure 3 Acidosis is a function of cell density in NRVM monolayers. Culture media pH was measured over time in NRVMs plated at 3 initial densities (3, 5 or 7 × 104 cells/cm2) in 0% and ambient air (20%) dry gas oxygen fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.](/cms/asset/adf4c632-a3e5-41d9-9315-7fc904f2007d/ianb19_a_293375_uf0003_b.gif)
Figure 4 HEPES buffering reduces acidosis in NRVM monolayers. Culture media pH was measured over time in NRVM monolayers plated at low density (3 × 10 4 cells/cm2) and cultured in three different HEPES concentrations (0, 25, 50 mM) in 0% and ambient air (20%) dry gas oxygen fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.
![Figure 4 HEPES buffering reduces acidosis in NRVM monolayers. Culture media pH was measured over time in NRVM monolayers plated at low density (3 × 10 4 cells/cm2) and cultured in three different HEPES concentrations (0, 25, 50 mM) in 0% and ambient air (20%) dry gas oxygen fractions. Error bars represent mean ± standard deviation of three cell cultures for each condition.](/cms/asset/c1ee1da8-d97c-4481-998c-d924df2f15bf/ianb19_a_293375_uf0004_b.gif)
Figure 5 HEPES reduces propidium-iodide (PI) staining in hypoxic (0% oxygen) monolayer cultures. Cells were stained with the viability marker calcein-AM and the membrane-permeant death marker PI. Data shown is percent PI-positive cells in NRVM monolayers plated at low density (3 × 104 cells/cm2) in 0% oxygen at three different HEPES concentrations: 0 mM (A), 25 mM (B), and 50 mM (C). Normoxic (20% oxygen) cultures with 0 mM HEPES (D) were used as a control. Error bars represent mean ± standard deviation of 6 measurements from 2 cell cultures for each condition (* p < 0.05 vs all other samples, † p < 0.10 vs. each other).
![Figure 5 HEPES reduces propidium-iodide (PI) staining in hypoxic (0% oxygen) monolayer cultures. Cells were stained with the viability marker calcein-AM and the membrane-permeant death marker PI. Data shown is percent PI-positive cells in NRVM monolayers plated at low density (3 × 104 cells/cm2) in 0% oxygen at three different HEPES concentrations: 0 mM (A), 25 mM (B), and 50 mM (C). Normoxic (20% oxygen) cultures with 0 mM HEPES (D) were used as a control. Error bars represent mean ± standard deviation of 6 measurements from 2 cell cultures for each condition (* p < 0.05 vs all other samples, † p < 0.10 vs. each other).](/cms/asset/13a874fd-0745-4ef6-88cc-df4ffa652031/ianb19_a_293375_uf0005_b.gif)
Figure 6 HEPES reduces TUNEL staining in hypoxic (0%) monolayer cultures. Data shown is percent TUNEL-positive cells in NRVM monolayers plated at low density (3 × 104 cells/cm2) in 0% oxygen at three different HEPES concentrations: 0 mM (A), 25 mM (B), and 50 mM (C). Normoxic (20% oxygen) cultures with 0 mM HEPES (D) were used as a positive control. Error bars represent mean ± standard deviation of 6 measurements from 2 cell cultures for each condition (* p < 0.05 vs. all other samples).
![Figure 6 HEPES reduces TUNEL staining in hypoxic (0%) monolayer cultures. Data shown is percent TUNEL-positive cells in NRVM monolayers plated at low density (3 × 104 cells/cm2) in 0% oxygen at three different HEPES concentrations: 0 mM (A), 25 mM (B), and 50 mM (C). Normoxic (20% oxygen) cultures with 0 mM HEPES (D) were used as a positive control. Error bars represent mean ± standard deviation of 6 measurements from 2 cell cultures for each condition (* p < 0.05 vs. all other samples).](/cms/asset/5ce27c76-7287-4d29-a2c7-58c57a74afe7/ianb19_a_293375_uf0006_b.gif)
Figure 7 Radial pH gradients in EHTs cultured in media containing three different concentrations of HEPES after 4 hrs: 50 mM (A), 25 mM (B), and 0 mM (C). Images of EHTs were captured with a digital camera and analyzed with image analysis software to generate phenol red coloration gradients. Phenol red color was calibrated to known pH values with cell-free gels equilibrated in acidified media (see methods).
![Figure 7 Radial pH gradients in EHTs cultured in media containing three different concentrations of HEPES after 4 hrs: 50 mM (A), 25 mM (B), and 0 mM (C). Images of EHTs were captured with a digital camera and analyzed with image analysis software to generate phenol red coloration gradients. Phenol red color was calibrated to known pH values with cell-free gels equilibrated in acidified media (see methods).](/cms/asset/d6174b8e-0e7a-4c16-a5d4-dc14c291604c/ianb19_a_293375_uf0007_b.gif)
Figure 8 HEPES increases calcein staining in EHTs. Images shown are calcein-positive cells in the edge region of EHTs cultured in three different concentrations of HEPES: 0 mM after 4 hrs (A); 0 mM at 36 hrs (B), 25 mM at 36 hrs (C), and 50 mM at 36 hrs (D). Graph shows histogram of calcein-positive cell density in EHTs after 36 hrs.
![Figure 8 HEPES increases calcein staining in EHTs. Images shown are calcein-positive cells in the edge region of EHTs cultured in three different concentrations of HEPES: 0 mM after 4 hrs (A); 0 mM at 36 hrs (B), 25 mM at 36 hrs (C), and 50 mM at 36 hrs (D). Graph shows histogram of calcein-positive cell density in EHTs after 36 hrs.](/cms/asset/5950c4b7-8899-4e5d-beba-6927783e3433/ianb19_a_293375_uf0008_b.gif)
Figure 9 HEPES reduces lactate dehydrogenase (LDH) release from EHTs. EHTs were cultured in three different concentration of HEPES over 36 hrs and culture media assayed for LDH. Data is expressed as a fraction of LDH from a lysate of the original number of entrapped cells. Error bars represents mean ± standard deviation of 3 measurements for each time point.
![Figure 9 HEPES reduces lactate dehydrogenase (LDH) release from EHTs. EHTs were cultured in three different concentration of HEPES over 36 hrs and culture media assayed for LDH. Data is expressed as a fraction of LDH from a lysate of the original number of entrapped cells. Error bars represents mean ± standard deviation of 3 measurements for each time point.](/cms/asset/6a438541-6a4b-4e14-8681-2c7a84ec5413/ianb19_a_293375_uf0009_b.gif)