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Articles

Identification of seeds of Phelipanche ramosa, Phelipanche mutelii and Orobanche cumana in the soils from different agricultural regions in Bulgaria by molecular markers

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Pages 520-528 | Received 30 Nov 2018, Accepted 05 Mar 2019, Published online: 09 Apr 2019

Figures & data

Table 1. List of the studied species, the location of their collection and the short names of the samples as they appear in phylogenic trees.

Figure 1. Relative germination percentage of seeds of O. cumana, P. ramosa and P. mutelii/P. rosmarina after treatment with GR24.

Note: The seeds were preconditioned for 14 days before treatment. Portions of the seeds of each species were treated with nano pure, sterile water in order to serve as negative controls.

Figure 1. Relative germination percentage of seeds of O. cumana, P. ramosa and P. mutelii/P. rosmarina after treatment with GR24.Note: The seeds were preconditioned for 14 days before treatment. Portions of the seeds of each species were treated with nano pure, sterile water in order to serve as negative controls.

Table 2. List of specific primers designed for isolation of ITS1/2 sequences.

Figure 2. Phylogenetic tree based on O. cumana ITS1/2 sequences annotated in NCBI and the sequences isolated from all Bulgarian samples. Maximum likelihood was used, applying the general time reversal model and a uniform rate of substitution. Phylogeny test – bootstrap method by 500 replications. The samples are listed in . Four sequences annotated in NCBI by other authors were incorporated in the tree as reference samples.

Figure 2. Phylogenetic tree based on O. cumana ITS1/2 sequences annotated in NCBI and the sequences isolated from all Bulgarian samples. Maximum likelihood was used, applying the general time reversal model and a uniform rate of substitution. Phylogeny test – bootstrap method by 500 replications. The samples are listed in Table 1. Four sequences annotated in NCBI by other authors were incorporated in the tree as reference samples.

Figure 3. Phylogenetic tree based on P. ramosa and P. mutelii/P.rosmarina ITS1/2 sequences annotated in NCBI and the sequences isolated from the Bulgarian representatives. Maximum likelihood was used, applying the general time reversal model and a uniform rate of substitution. Phylogeny test – bootstrap method by 500 replications. The samples are listed in . Ten sequences annotated in NCBI by other authors were incorporated in the tree for comparison.

Figure 3. Phylogenetic tree based on P. ramosa and P. mutelii/P.rosmarina ITS1/2 sequences annotated in NCBI and the sequences isolated from the Bulgarian representatives. Maximum likelihood was used, applying the general time reversal model and a uniform rate of substitution. Phylogeny test – bootstrap method by 500 replications. The samples are listed in Table 1. Ten sequences annotated in NCBI by other authors were incorporated in the tree for comparison.

Table 3. Comparative list of unique SNPs in ITS1/2 sequences of P. mutelii, P. rosmarina and our samples.