Figures & data
Table 1. Modulators targeting CRYs.
Table 2. Modulators targeting REV-ERBs.
Table 3 Representative modulators targeting RORs.
Table 4 Representative modulators targeting kinases.
Table 5. Representative modulators targeting epigenetic proteins.
Chen Z, Yoo SH, Takahashi JS. Development and therapeutic potential of small-molecule modulators of circadian systems. Annu Rev Pharmacol Toxicol 2018;58:231–52. He B, Chen Z. Molecular targets for small-molecule modulators of circadian clocks. Curr Drug Metab 2016;17:503–12. Hirota T, Lee JW, John PCS, et al. Identification of small molecule activators of cryptochrome. Science 2012;337:1094–97. Nangle S, Xing W, Zheng N. Crystal structure of mammalian cryptochrome in complex with a small molecule competitor of its ubiquitin ligase. Cell Res 2013;23:1417–19. Hirano A, Braas D, Fu Y-H, et al. FAD regulates CRYPTOCHROME protein stability and circadian clock in mice. Cell Rep 2017;19:255–66. Lee JW, Hirota T, Kumar A, et al. Development of Small-Molecule Cryptochrome Stabilizer Derivatives as Modulators of the Circadian Clock . ChemMedChem 2015;10:1489–97. Oshima T, Yamanaka I, Kumar A, et al. C-H Activation Generates Period-Shortening Molecules That Target Cryptochrome in the Mammalian Circadian Clock. Angew Chem Int Ed Engl 2015;54:7193–97. Chun SK, Jang J, Chung S, et al. Identification and validation of cryptochrome inhibitors that modulate the molecular circadian clock. ACS Chem. Biol 2014;9:703–10. Humphries PS, Bersot R, Kincaid J, et al. Carbazole-containing amides and ureas: Discovery of cryptochrome modulators as antihyperglycemic agents. Bioorg Med Chem Lett 2018;28:293–97. Miller S, Son YL, Aikawa Y, et al. Isoform-selective regulation of mammalian cryptochromes. Nat Chem Bio 2020;16:676–85. Raghuram S, Stayrook KR, Huang P, et al. Identification of heme as the ligand for the orphan nuclear receptors REV-ERBalpha and REV-ERBbeta. Nat Struct Mol Biol 2007;14:1207–13. Yin L, Wu N, Curtin JC, et al. Rev-erbalpha, a heme sensor that coordinates metabolic and circadian pathways. Science 2007;318:1786–89. Meng QJ, McMaster A, Beesley S, et al. Ligand modulation of REV-ERBalpha function resets the peripheral circadian clock in a phasic manner. J Cell Sci 2008;121:3629–35. Kumar N, Solt LA, Wang Y, et al. Regulation of adipogenesis by natural and synthetic REV-ERB ligands. Endocrinology 2010;151:3015–25. Grant D, Yin L, Collins JL, et al. GSK4112, a small molecule chemical probe for the cell biology of the nuclear heme receptor Rev-erbα. ACS Chem Biol 2010;5:925–32. Solt LA, Wang Y, Banerjee S, et al. Regulation of circadian behaviour and metabolism by synthetic REV-ERB agonists. Nature 2012;485:62–8. Trump RP, Bresciani S, Cooper AW, et al. Optimized chemical probes for REV-ERBα. J. Med. Chem 2013;56:4729–37. Shin Y, Noel R, Banerjee S, et al. Small molecule tertiary amines as agonists of the nuclear hormone receptor Rev-erbα. Bioorg Med Chem Lett 2012;22:4413–17. Noel R, Song X, Shin Y, et al. Synthesis and SAR of tetrahydroisoquinolines as Rev-erbα agonists. Bioorg Med Chem Lett 2012;22:3739–42. Lee J, Lee S, Chung S, et al. Identification of a novel circadian clock modulator controlling BMAL1 expression through a ROR/REV-ERB-response element-dependent mechanism. Biochem. Biophys. Res. Commun 2016;469:580–86. Kojetin D, Wang Y, Kamenecka TM, et al. Identification of SR8278, a synthetic antagonist of the nuclear heme receptor REV-ERB. ACS Chem Biol 2011;6:131–34. De Mei C, Ercolani L, Parodi C, et al. Dual inhibition of REV-ERBβ and autophagy as a novel pharmacological approach to induce cytotoxicity in cancer cells. Oncogene 2015;34:2597–2608. Torrente E, Parodi C, Ercolani L, et al. Synthesis and in vitro anticancer activity of the first class of dual inhibitors of REV-ERBβ and autophagy. J. Med. Chem 2015;58:5900–15. Pariollaud M, Gibbs J, Hopwood T, et al. Circadian clock component REV-ERBα controls homeostatic regulation of pulmonary inflammation. J Clin Invest 2018;128:2281–96. Hering Y, Berthier A, Duez H, et al. Development and implementation of a cell-based assay to discover agonists of the nuclear receptor REV-ERBα. J Biol Methods 2018;5:e94 Kumar N, Solt LA, Conkright JJ, et al. The benzenesulfoamide T0901317 [N-(2,2,2-trifluoroethyl)-N-[4-[2,2,2-trifluoro-1-hydroxy-1-(trifluoromethyl)ethyl]phenyl]-benzenesulfonamide] is a novel retinoic acid receptor-related orphan receptor-alpha/gamma inverse agonist. Mol Pharmacol 2010;77:228–36. Wang Y, Kumar N, Nuhant P, et al. Identification of SR1078, a synthetic agonist for the orphan nuclear receptors RORα and RORγ. ACS Chem Biol 2010;5:1029–34. Solt LA, Kumar N, Nuhant P, et al. Suppression of TH17 differentiation and autoimmunity by a synthetic ROR ligand. Nature 2011;472:491–4. Kumar N, Kojetin DJ, Solt LA, et al. Identification of SR3335 (ML-176): a synthetic RORα selective inverse agonist. ACS Chem. Biol 2011;6:218–22. Kumar N, Lyda B, Chang MR, et al. Identification of SR2211: a potent synthetic RORγ-selective modulator. ACS Chem. Biol 2012;7:672–77. Huh JR, Englund EE, Wang H, et al. Identification of Potent and Selective Diphenylpropanamide RORγ Inhibitors. Acs Med Chem Lett 2013;4:79–84. Kotoku M, Maeba T, Fujioka S, et al. Discovery of Second Generation RORγ Inhibitors Composed of an Azole Scaffold. J Med Chem 2019;62:2837–42. Zhang Y, Wu X, Xue X, et al. Discovery and characterization of XY101, a potent, selective, and orally bioavailable RORγ inverse agonist for treatment of castration-resistant prostate cancer. J Med Chem 2019;62:4716–30. Eide EJ, Woolf MF, Kang H, et al. Control of mammalian circadian rhythm by CKIepsilon-regulated proteasome-mediated PER2 degradation. Mol Cell Biol 2005;25:2795–807. Vanselow K, Vanselow JT, Westermark PO, et al. Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). Genes Dev 2006;20:2660–72. Reischl S, Vanselow K, Westermark PO, et al. Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J Biol Rhythms 2007;22:375–86. Meng Q-J, Maywood ES, Bechtold DA, et al. Entrainment of disrupted circadian behavior through inhibition of casein kinase 1 (CK1) enzymes. Proc Natl Acad Sci USA 2010;107:15240–45. Lee JW, Hirota T, Peters EC, et al. A small molecule modulates circadian rhythms through phosphorylation of the period protein. Angew Chem Int Ed Engl 2011;50:10608–11. Chen Z, Yoo S-H, Park Y-S, et al. Identification of diverse modulators of central and peripheral circadian clocks by high-throughput chemical screening. Proc Natl Acad Sci USA 2012;109:101–06. Mosser EA, Chiu CN, Tamai TK, et al. Identification of pathways that regulate circadian rhythms using a larval zebrafish small molecule screen. Sci Rep 2019;9:12405 Ono A, Sato A, Fujimoto KJ, et al. 3,4-Dibromo-7-Azaindole Modulates Arabidopsis Circadian Clock by Inhibiting Casein Kinase 1 Activity. Plant Cell Physiol 2019;60:2360–68. Hirota T, Lewis WG, Liu AC, et al. A chemical biology approach reveals period shortening of the mammalian circadian clock by specific inhibition of GSK-3beta. Proc Natl Acad Sci USA 2008;105:20746–51. Uehara TN, Mizutani Y, Kuwata K, et al. Casein kinase 1 family regulates PRR5 and TOC1 in the Arabidopsis circadian clock. Proc Natl Acad Sci USA 2019;116:11528–36. Isojima Y, Nakajima M, Ukai H, et al. CKIepsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock. Proc Natl Acad Sci USA 2009;106:15744–9. Tamai TK, Nakane Y, Ota W, et al. Identification of circadian clock modulators from existing drugs. EMBO Mol Med 2018;10:e8724. Chang HC, Guarente L. SIRT1 mediates central circadian control in the SCN by a mechanism that decays with aging. Cell 2013;153:1448–60. Bellet MM, Nakahata Y, Boudjelal M, et al. Pharmacological modulation of circadian rhythms by synthetic activators of the deacetylase SIRT1. Proc Natl Acad Sci USA 2013;110:3333–8. Wang N, Yang G, Jia Z, et al. Vascular PPARgamma controls circadian variation in blood pressure and heart rate through Bmal1. Cell Metab 2008;8:482–91. Onishi Y, Kawano Y. Rhythmic binding of Topoisomerase I impacts on the transcription of Bmal1 and circadian period. Nucleic Acids Res 2012;40:9482–92.