Application of DNA barcoding and metabarcoding for species identification in salmon products

ABSTRACT

Mislabelling is a significant manifestation of food fraud. Traditional Sanger sequencing technology is the gold standard for seafood species identification. However, this method is not suitable for analysing processed samples that may contain more than one species. This study tested the feasibility of next-generation sequencing in identifying mixed salmon products. Salmon samples containing up to eight species were amplified using 16S rRNA mini-barcode primers, and sequenced on an Illumina HiSeq2500 platform. All species were accurately identified, and mixtures as low as 1% (w/w) could be detected. Furthermore, this study conducted a market survey of 32 products labelled as salmon. For pure and mixed fish products, Sanger and next-generation sequencing techniques were respectively used for species identification, and for NGS results, we also used real-time PCR method to cross-validate the mixed products to further verify the accuracy of the DNA metabarcoding technology established in this study. DNA barcoding and metabarcoding of commercial salmon food products revealed the presence of mislabelling in 16 of 32 (50%) samples. The developed DNA barcoding and metabarcoding methods are useful for the identification of salmon species in food and can be used for quality control of various types of salmon products.

Graphical Abstract

KEYWORDS:

• Salmon
• DNA barcoding
• DNA metabarcoding
• NGS
• species identification

Supplementary material

Supplemental data for this article can be accessed on the publisher’s website.

Additional information

Funding

This work is financially supported by the National Key R&D Program of China (2016YFD0401104) and the National Key R&D Program of China (2017YFE0110800).