Analysis of mtDNA control region of an isolated population of Eld’s deer (Rucervus eldii) reveals its vulnerability to inbreeding

Figures & data

Table 1. Polymorphic sites within 15 mtDNA control region haplotypes of Eld’s deer and the distribution of haplotypes in each population.

nt position		0	1	1	1	1	1	1	1	2	2	2	2	2	2	2	2	2	2	2	2	2	2	3	3	3	3	3	3	3	3	3	3	3	3	3	4	4	4	4	4	4
		5	0	1	4	6	7	7	9	0	1	3	4	6	6	6	6	7	7	7	8	8	9	0	0	1	1	1	3	3	3	4	6	6	7	9	0	4	4	4	4	6
Pop. (n)	Hap	4	7	9	9	3	5	7	5	9	6	6	4	6	7	8	9	0	1	7	0	8	6	3	6	4	6	7	3	4	5	0	1	8	8	9	9	2	3	5	6	9
RET (4)	H1	C	C	G	T	T	T	A	A	G	C	C	G	T	T	T	C	T	T	T	C	A	C	T	T	A	C	A	A	T	T	T	C	G	T	G	A	G	T	T	C	C
RET (3)	H2	.	.	.	.	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	.	.	.	.	.	A	.	.	.	.	.	.	.	.
RET (4)	H3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	.	.	.	.	.	A	.	.	.	.	.	.	.	.
RET (10)	H4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	.	.	.	.	.	.	.	G	.	G	.	C	.	.	.	.	.	.	.	.	.	.	T	.
RET (1)	H5	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	.	C	.	.	.	.	.	.	G	.	G	.	C	.	.	.	.	.	.	.	.	.	.	.	.
RET (1)	H6	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	.	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
RET (7)	H7	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	.	.	.	.	.	.	G	.	G	.	C	.	.	.	.	.	.	.	.	.	.	.	.
RET (5)	H8	.	.	.	.	.	.	.	.	.	.	T	.	.	.	.	T	.	.	.	.	.	.	.	.	G	.	.	.	.	C	.	.	A	.	A	G	.	.	.	.	.
RET (1)	H9	.	.	.	.	.	.	.	G	.	.	.	.	.	.	.	.	C	C	.	.	.	T	.	.	G	.	G	.	C	.	.	.	.	.	.	.	A	C	.	.	.
RET (1)	H10	.	.	.	.	.	.	.	G	.	.	T	A	.	.	.	T	C	.	.	T	.	T	.	.	G	.	.	.	.	C	.	.	A	.	A	G	A	C	.	.	.
REE (30)	H11	.	.	.	.	.	C	G	G	.	.	.	.	.	.	.	.	C	.	.	.	.	.	.	.	.	T	G	.	.	.	C	T	A	.	.	G	.	.	C	.	T
RES (5)	H12	T	.	C	C	.	.	.	G	.	.	.	.	C	C	C	.	.	C	C	.	.	T	.	.	.	.	.	G	.	.	.	T	A	.	.	G	.	.	C	T	T
RES (1)	H13	T	.	C	.	.	.	.	.	A	T	.	.	C	.	.	.	C	.	C	.	.	.	C	C	.	.	.	G	.	C	.	.	A	.	.	G	.	.	.	T	.
RES (1)	H14	T	T	C	.	.	.	.	.	A	T	.	.	C	.	.	.	C	.	C	.	.	.	C	C	G	.	.	G	.	C	.	.	A	.	.	G	.	.	.	.	.
REH (22)	H15	T	.	C	.	.	.	.	G	.	.	.	.	C	.	.	.	C	.	C	.	G	.	.	.	G	.	.	.	.	.	.	.	A	C	.	G		.	.	T	.

The top three rows of numbers represent the polymorphic nucleotide (nt) positions and dot (.) indicates similarity with the first sequence.

Figure 1. Bayesian (MCMC) consensus tree of 96 Eld’s deer sequences based in the mtDNA control region. Posterior values in percentage are provided at their respective nodes. The Elaphurus davidianus (AF291894) was used as an out group. Gray shade represents clade of captive and wild population of Sangai deer (R. e. eldii).