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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 1
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Mitogenome Announcement

Mitochondrial genome of an Allegheny Woodrat (Neotoma magister)

Mandy SchofieldDepartment of Biological Sciences, Towson University, Towson, MD, USA; View further author information
,
Joseph DuchampDepartment of Biology, Indiana University of Pennsylvania, Indiana, PA, USA; View further author information
,
Jeffery L. LarkinDepartment of Biology, Indiana University of Pennsylvania, Indiana, PA, USA; View further author information
,
Timothy J. SmyserUSDA-APHIS-WS National Wildlife Research Center, Fort Collins, CO, USA; ;Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USAView further author information
&
Jacqueline M. DoyleDepartment of Biological Sciences, Towson University, Towson, MD, USA; Correspondence[email protected]
View further author information
Pages 256-258 | Received 13 Jan 2018, Accepted 18 Jan 2018, Published online: 22 Feb 2018

Figures & data

Figure 1. We used CLUSTALW implemented by MEGA 7.0.21 to align the mtDNA genome sequences from N. magister, N. fuscipes, N. mexicana (the only other woodrats for which complete mitogenome sequences were available from NCBI), 17 other Cricetid species and an outgroup (Sciurus vulgaris). This alignment was used to produce a maximum likelihood tree using the GTR + G + I model of evolution and 1000 bootstraps. Bootstrap values are included at each node and each species label includes the GenBank accession number, with the exception of N. magister (GenBank accession number MG182016).

Figure 1. We used CLUSTALW implemented by MEGA 7.0.21 to align the mtDNA genome sequences from N. magister, N. fuscipes, N. mexicana (the only other woodrats for which complete mitogenome sequences were available from NCBI), 17 other Cricetid species and an outgroup (Sciurus vulgaris). This alignment was used to produce a maximum likelihood tree using the GTR + G + I model of evolution and 1000 bootstraps. Bootstrap values are included at each node and each species label includes the GenBank accession number, with the exception of N. magister (GenBank accession number MG182016).

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