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Mitochondrial DNA Part B
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Volume 3, 2018 - Issue 1
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Mito Communication

The complete mitochondrial genomes of five lichenized fungi in the genus Usnea (Ascomycota: Parmeliaceae)

Erik R. FunkDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
,
Alexander N. AdamsDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
,
Sarah M. SpottenDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
,
Roxanne A. Van HoveDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
,
Kristina T. WhittingtonDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
,
Kyle G. KeepersDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; Correspondence[email protected]
View further author information
,
Cloe S. PogodaDepartment of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO, USA; View further author information
,
James C. LendemerInstitute of Systematic Botany, The New York Botanical Garden, Bronx, NY, USA; View further author information
,
Erin A. TrippDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; ;Museum of Natural History, University of Colorado, Boulder, CO, USAView further author information
&
Nolan C. KaneDepartment of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; View further author information
 show all
Pages 305-308 | Received 12 Feb 2018, Accepted 13 Feb 2018, Published online: 28 Feb 2018

Figures & data

Figure 1. Phylogenetic relationships among Usnea and other lichens inferred using maximum likelihood (see Methods section). Numbers next to nodes represent bootstrap support mapped onto the most likely tree (–ln L = 68803.11). The long branch leading to Usnea was shortened (hashes) for the figure.

Figure 1. Phylogenetic relationships among Usnea and other lichens inferred using maximum likelihood (see Methods section). Numbers next to nodes represent bootstrap support mapped onto the most likely tree (–ln L = 68803.11). The long branch leading to Usnea was shortened (hashes) for the figure.

Related Research Data

Vezdaea acicularis, An Addition to the North American Lichen Flora
Source: American Bryological and Lichenological Society
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
Source: Oxford University Press
In vitro activities of the lichen secondary metabolites vulpinic acid, (+)-usnic acid, and (-)-usnic acid against aerobic and anaerobic microorganisms.
Source: American Society for Microbiology
Genomic insights into the mitochondria of 11 eastern North American species of Cladonia.
Source: Informa UK Limited
Species Concepts in the Genus Usnea (Lichenized Ascomycetes)
Source: Cambridge University Press (CUP)
Saxicolous Species of Usnea Subgenus Usnea (Lichenized Ascomycetes) in North America
Source: American Bryological and Lichenological Society
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Source: Oxford University Press (OUP)
Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene.
Source: Elsevier BV
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Source: Mary Ann Liebert Inc
Automatic annotation of organellar genomes with DOGMA
Source: eScholarship, University of California
The 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota – Approaching one thousand genera
Source: American Bryological and Lichenological Society
Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria
Source: Wiley

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