Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)

Figures & data

Figure 1. Phylogenetic tree inferred by maximum-likelihood using 82 protein-coding gene sequences of 10 species including seven species from the Asparagales order: Allium cepa (genotype male sterile KF728079 and genotype male fertile NC_024813), Allium sativum (NC_031829), Eustrephus latifolius (KM233639), Polygonatum cyrtonema (KT630835), Cypripedium macranthos (KF925434), Asparagus officinalis (NC_034777), Iris gatesii (KM014691); two species from Liliales order: Bomarea edulis (NC_025306), Lilium distichum (NC_029937); and Nicotiana tabacum (NC_001879) as an outgroup. PhyML 3.1 (Guindon et al. 2010) was used for the sequence alignment and construction of the tree. Bootstrap support values based on 1000 replicates are displayed on each node.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307–321.

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