The complete mitogenome of Caridina indistincta ‘sp. A’ (Decapoda: Atyidae)

Figures & data

Figure 1. Phylogenetic placement of the new Caridina indistincta sp. A mitogenome (GenBank: MH189850) relative to 20 Atyidae mitogenomes sourced from the NCBI RefSeq database. Tip labels include GenBank accession and species name; node labels show bootstrap result. Alignment of mitogenomes (excluding 16S, 12S, and control region) was performed using MAFFT v7.017 (Katoh et al. 2002). A maximum likelihood phylogenetic analysis was performed on the final alignment of 12 821 bp with RAxML v8.2.11 using the GTR + GAMMA substitution model with 1000 bootstrap replicates (Stamatakis 2006).

Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059–3066.

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Stamatakis A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22:2688–2690.

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