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Mitogenome Announcement

Intraspecific variation and phylogeographic patterns of the grey-capped greenfinch Chloris sinica ssp. (Passeriformes: Fringillidae)

, , , &
Pages 833-834 | Received 15 May 2018, Accepted 18 Jun 2018, Published online: 08 Aug 2018

Figures & data

Figure 1. Phylogenetic tree of Chloris sinica ssp. and other related species belonging to Fringillidae based on complete mitochondrial genome sequences. The complete mitochondrial genomes were downloaded from GenBank and the phylogenetic tree is constructed by a neighbour-joining method with 1000 bootstrap replicates containing the full genomes derived from Fringillidae. Fringilla montifringilla was used as an outgroup for tree rooting. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. GenBank accession numbers of each mitochondrial genome sequence are given in the bracket after the species name (MH047558 in this study collected from Ulleung Island, Korea; HQ915865 from China; MH047559 from Taean, Korea; KM078783 from unknown sampling site, Korea). The subspecies from Ulleung Island population in South Korea was approximated morphologically as kawarahiba (Won Citation1981; Won and Kim Citation2012), however to date no phylogenetic data for the C. sinica subspecies are available [hereinafter referred to as unidentified subspecies for Ulleung population(s)].

Figure 1. Phylogenetic tree of Chloris sinica ssp. and other related species belonging to Fringillidae based on complete mitochondrial genome sequences. The complete mitochondrial genomes were downloaded from GenBank and the phylogenetic tree is constructed by a neighbour-joining method with 1000 bootstrap replicates containing the full genomes derived from Fringillidae. Fringilla montifringilla was used as an outgroup for tree rooting. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. GenBank accession numbers of each mitochondrial genome sequence are given in the bracket after the species name (MH047558 in this study collected from Ulleung Island, Korea; HQ915865 from China; MH047559 from Taean, Korea; KM078783 from unknown sampling site, Korea). The subspecies from Ulleung Island population in South Korea was approximated morphologically as kawarahiba (Won Citation1981; Won and Kim Citation2012), however to date no phylogenetic data for the C. sinica subspecies are available [hereinafter referred to as unidentified subspecies for Ulleung population(s)].