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Mitogenome Announcement

The complete male-type mitochondrial genomes of the Fatmucket, Lampsilis siliquoidea, and the endangered Arkansas Fatmucket, Lampsilis powellii

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Pages 107-109 | Received 23 Aug 2018, Accepted 20 Sep 2018, Published online: 26 Nov 2018

Figures & data

Figure 1. (A) Maximum-likelihood phylogeny using a Jukes-Cantor model and 1000 bootstrap replicates from 13 protein-coding mitochondrial genes from both F- and M-type mitochondrial DNA of unionid mussels. Bootstrap support values are reported at each node. (B) Orientation and number of transmembrane domains (TMD) for F-ORFs and M-ORFs of corresponding species in (A). Internal and external refer to orientation of the ORFs through the membrane, number of domains is represented by each circular structure. The mitotype, relative membrane location, and subfamily are denoted by color. *A defined M-ORF was not available. **Putative orientation could not be confidently determined. Phylogenetic analysis was conducted with IQ-Tree, and putative TMDs were assessed by Geneious using a hidden Markov model. GenBank accession numbers from top to bottom: HM856636, FJ809754, KF030964, KT326917, KY021078, JQ691662, MF326971, MF326973, FJ809750, KU873123, KU873121, HM856635, FJ809755, KF030963, KT326918, KY021073, KC847114, MF326972, MF326974, FJ809751, KU873124, and KU873122.

Figure 1. (A) Maximum-likelihood phylogeny using a Jukes-Cantor model and 1000 bootstrap replicates from 13 protein-coding mitochondrial genes from both F- and M-type mitochondrial DNA of unionid mussels. Bootstrap support values are reported at each node. (B) Orientation and number of transmembrane domains (TMD) for F-ORFs and M-ORFs of corresponding species in (A). Internal and external refer to orientation of the ORFs through the membrane, number of domains is represented by each circular structure. The mitotype, relative membrane location, and subfamily are denoted by color. *A defined M-ORF was not available. **Putative orientation could not be confidently determined. Phylogenetic analysis was conducted with IQ-Tree, and putative TMDs were assessed by Geneious using a hidden Markov model. GenBank accession numbers from top to bottom: HM856636, FJ809754, KF030964, KT326917, KY021078, JQ691662, MF326971, MF326973, FJ809750, KU873123, KU873121, HM856635, FJ809755, KF030963, KT326918, KY021073, KC847114, MF326972, MF326974, FJ809751, KU873124, and KU873122.