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Mitochondrial DNA Part B
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Volume 4, 2019 - Issue 2
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Mitogenome Announcement

Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)

Mikhail A. FilyushinInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-3668-7601View further author information
ORCID Icon,
Alexey V. BeletskyInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaView further author information
&
Elena Z. KochievaInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, RussiaView further author information
Pages 2602-2603 | Received 10 Jun 2019, Accepted 22 Jun 2019, Published online: 22 Jul 2019

Figures & data

Figure 1. Phylogenetic tree inferred by maximum-likelihood using 80 protein-coding gene sequences from plastomes of Allium species (Allium altaicum (NC_040972), Allium cepa (NC_024813), Allium fistulosum (NC_040222), Allium obliquum (NC_037199), Allium porrum (MK820026), Allium sativum (NC_031829)) and Asparagus officinalis (NC_034777) as an outgroup. PhyML 3.1 was used for the sequence alignment and construction of the tree. Bootstrap support values based on 1000 replicates are displayed on each node.

Figure 1. Phylogenetic tree inferred by maximum-likelihood using 80 protein-coding gene sequences from plastomes of Allium species (Allium altaicum (NC_040972), Allium cepa (NC_024813), Allium fistulosum (NC_040222), Allium obliquum (NC_037199), Allium porrum (MK820026), Allium sativum (NC_031829)) and Asparagus officinalis (NC_034777) as an outgroup. PhyML 3.1 was used for the sequence alignment and construction of the tree. Bootstrap support values based on 1000 replicates are displayed on each node.

Related Research Data

Metabolite Profiling of Leek (Allium PorrumL) Cultivars
Source: Wiley
The complete plastid genome sequence of garlic Allium sativum L
Source: Informa UK Limited
Comparative analysis of the complete plastomes of garlic Allium sativum and bulb onion Allium cepa.
Source: Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences
Bandage: interactive visualization of de novo genome assemblies
Source: Oxford University Press (OUP)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Source: Mary Ann Liebert Inc
Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae).
Source: Informa UK Limited

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