The complete mitochondrial genome information of Phoxinus phoxinus (Cypriniformes: Cyprinidae) on the Korean Peninsula and the phylogenetic implication

Figures & data

Figure 1. Bayesian inference for the phylogenetic placement of Korean Phoxinus phoxinus (H: Han; S: Samcheogoship; bolded) among Leuciscinae species reconstructed by MrBayes 3.2 (Ronquist et al. 2012) using 13 protein-coding mitochondrial genes. Cobitis striata (Cobitidae) was used as an outgroup. Each parentheses next to the species name indicates the NCBI GenBank accession number. GTR + I + G was selected as the best-fit substitution model by jModeltest 2.1.4 (Darriba et al. 2012) under Akaike information criterion (Akaike 1974), and two parallel runs were performed for two million Markov Chain Monte Carlo (MCMC) generations with sampling every 1,000 steps. Posterior probabilities were indicated on the nodes.

Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.

 PubMed Web of Science ®Google Scholar

Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9(8):772.

 PubMed Web of Science ®Google Scholar

Akaike H. 1974. A new look at the statistical model identification. IEEE Trans Automat Contr. 19(6):716–723.

 Web of Science ®Google Scholar