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Mitochondrial DNA Part B
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Volume 5, 2020 - Issue 2
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Mitogenome Announcement

The complete mitochondrial genomes of two amphipod species of the genus Grandidierella (Crustacea: Amphipoda)

Kyoshiro HikiCenter for Environmental Risk Research, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan; Correspondence[email protected] [email protected]
ORCID Iconhttp://orcid.org/0000-0001-7898-9486View further author information
ORCID Icon,
Hiroyuki AriyamaOsaka Museum of Natural History, Higashi-Sumiyoshi, Osaka, Japan; ORCID Iconhttp://orcid.org/0000-0001-7312-5187View further author information
ORCID Icon &
Nobuyoshi NakajimaCenter for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Tsukuba, Ibaraki, JapanORCID Iconhttp://orcid.org/0000-0002-0040-9557View further author information
ORCID Icon
Pages 1535-1536 | Received 12 Feb 2020, Accepted 07 Mar 2020, Published online: 24 Mar 2020

Figures & data

Figure 1. Maximum likelihood tree of 13 PCGs in amphipod mitochondrial genomes with their accession numbers. Species in orange represent the Grandidierella genus. Non-parametric bootstrap values (based on 200 times resampling) are shown at nodes. The phylogenetic tree was inferred using IQ-TREE v1.6.12 with the ‘–spp’ option to allow partition-specific evolution rates. The best-fit model for each PCG was determined by ModelFinder (Kalyaanamoorthy et al. Citation2017) implemented in IQ-TREE, based on Akaike information criteria. The phylogenetic tree was visualized by FigTree v1.4.4. Isopod species (Ligia oceanica) was used as an outgroup.

Figure 1. Maximum likelihood tree of 13 PCGs in amphipod mitochondrial genomes with their accession numbers. Species in orange represent the Grandidierella genus. Non-parametric bootstrap values (based on 200 times resampling) are shown at nodes. The phylogenetic tree was inferred using IQ-TREE v1.6.12 with the ‘–spp’ option to allow partition-specific evolution rates. The best-fit model for each PCG was determined by ModelFinder (Kalyaanamoorthy et al. Citation2017) implemented in IQ-TREE, based on Akaike information criteria. The phylogenetic tree was visualized by FigTree v1.4.4. Isopod species (Ligia oceanica) was used as an outgroup.

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