Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)

Figures & data

Figure 1. Specimen of Devario interruptus was collected from the Yingjiang County, Yunnan Province, China. Photograph by Xiao Jiang CHEN on Jun 10, 2021.

Figure 2. Complete mitochondrial genome map of Devario interruptus (GenBank: MZ853154), with 13 protein coding genes, 22 tRNAs, 2 rRNAs, and 2 non-coding regions. Genes encoded on light strand and heavy-strand were shown inner and outside of the gray circle respectively.

Table 1. Characteristics of the mitochondrial genome of Devario interruptus.

Gene	Start	Stop	Length(bp)	Space (+) Overlap (−)	Codons Initial/ Terminal	Strand
tRNA-Phe	1	70	70	0		H
12S rRNA	71	1024	954	2		H
tRNA-Val	1027	1097	71	19		H
16S rRNA	1117	2767	1651	−1		H
tRNA-Leu	2767	2840	74	0		H
ND1	2841	3815	975	1	ATG/TAA	H
tRNA-Ile	3817	3888	72	−2		H
tRNA-Gln	3887	3957	71	0		L
tRNA-Met	3958	4026	69	0		H
ND2	4027	5071	1045	−2	ATG/TAG	H
tRNA-Trp	5072	5141	70	2		H
tRNA-Ala	5144	5211	68	1		L
tRNA-Asn	5213	5285	73	2		L
OL	5288	5317	30	−1		L
tRNA-Cys	5317	5382	66	0		L
tRNA-Tyr	5383	5452	70	1		L
COX1	5454	7004	1551	0	GTG/TAA	H
tRNA-Ser	7005	7075	71	2		L
tRNA-Asp	7078	7147	70	12		H
COX2	7160	7847	688	3	ATG/T	H
tRNA-Lys	7851	7923	73	0		H
ATP8	7924	8088	165	−7	ATG/TAG	H
ATP6	8082	8765	684	−1	ATG/TAA	H
COX3	8765	9547	783	−1	ATG/TAA	H
tRNA-Gly	9547	9617	71	0		H
ND3	9618	9966	349	0	ATG/T	H
tRNA-Arg	9967	10034	68	0		H
ND4L	10035	10331	297	−7	ATG/TAA	H
ND4	10325	11703	1379	3	ATG/TA	H
tRNA-His	11707	11776	70	0		H
tRNA-Ser	11777	11845	69	−1		H
tRNA-Leu	11845	11917	73	1		H
ND5	11919	13724	1806	−4	ATG/TAA	H
ND6	13721	14242	522	2	ATG/TAA	L
tRNA-Glu	14245	14313	69	8		L
CYTB	14322	15462	1141	0	ATG/T	H
tRNA-Thr	15463	15535	73	5		H
tRNA-Pro	15541	15610	70	445		L
D-loop	16056	16632	577	103		H

OL: origin of L-strand replication; D-loop: displacement loop region

Figure 3. Phylogenetic reconstruction of D. interruptus and other 18 species based on the concatenated mitochondrial protein-coding genes using Maximum-likelihood method. Barilius bendelisis and Opsarius pulchellus were set to be outgroups. Numbers near the nodes indicated bootstrap support values from 1000 replicates.

Data availability statement

The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at (https://www.ncbi.nlm.nih.gov/) under the accession no. MZ853154. The associated "BioProject", "Bio-Sample" and "SRA" numbers are PRJNA769978, SAMN22187307, SRR16301567, respectively.