The complete chloroplast genome sequence of Castanopsis fordii Hance (Fagaceae)

Figures & data

Figure 1. The Sample picture of C. fordii. The picture taken by Huang Yonglin in the Haiyang Mountain Nature Reserve.

Figure 2. The Genome map of C. fordii. Genes inside the circle are transcribed clockwise, and those on the outside are transcribed counter-clockwise. Genes are colored according to functional categories. The darker grey area in the inner circle corresponds to GC content, whereas the lighter grey corresponds to AT content.

Figure 3. The ML phylogenetic tree based on fourteen complete chloroplast genomes. Maximum-likelihood phylogenetic tree was constructed by GTRCATI Model of RAxML based on complete cp genomes. The sequence type is the nucleotide sequence of the conservative coding gene. The bootstrap check value is 100. Numbers close to each node are bootstrap support values. Accession number: Castanopsis concinna KT793041.1 (Shi et al. 2022), Castanopsis hainanensis MG383644.1 (Ogoma et al. 2022), Castanopsis fargesii NC_047230.1 (Li et al. 2022), Castanopsis carlesii NC_057119.1 (Wang et al. 2022), Castanopsis sclerophylla MT627605.1 (Miao et al. 2020), Castanopsis echinocarpa NC_023801.1 (Guo et al. 2022), Castanopsis tibetana ON710842 (Sanchez-Puerta and Abbona 2014), Castanopsis eyrei ON550006, Castanopsis chinensis ON500675, Castanopsis fordii ON710841 (Li et al. 2022), Lithocarpus balansae KP299291.1 (Shi et al. 2022), Castanea henryi KX954615.1 (Shi et al. 2022), Castanea mollissima NC_014674 (Jansen et al. 2011), Lithocarpus hancei MW375417.1 (Shi et al. 2022). Castanopsis eyrei and Castanopsis chinensis have no publications and can only cite the sequences by accession numbers.

Shi X, Xu W, Wan M, Sun Q, Chen Q, Zhao C, Sun K, Shu Y. 2022. Comparative analysis of chloroplast genomes of three medicinal Carpesium species: genome structures and phylogenetic relationships. PLoS One. 17(8):e0272563.

 PubMedGoogle Scholar

Ogoma CA, Liu J, Stull GW, Wambulwa MC, Oyebanji O, Milne RI, Monro AK, Zhao Y, Li D-Z, Wu Z-Y, et al. 2022. Deep insights into the plastome evolution and phylogenetic relationships of the Tribe Urticeae (Family Urticaceae). Front Plant Sci. 13:870949.

 PubMedGoogle Scholar

Li Y, Wang TR, Kozlowski G, Liu M, Yi L, Song Y. 2022. Complete chloroplast genome of an endangered species Quercus litseoides, and its comparative, evolutionary, and phylogenetic study with other Quercus Section Cyclobalanopsis Species. Genes (Basel). 13(7):1184.

 PubMed Web of Science ®Google Scholar

Wang J, Qian J, Jiang Y, Chen X, Zheng B, Chen S, Yang F, Xu Z, Duan B. 2022. Comparative analysis of chloroplast genome and new insights into phylogenetic relationships of polygonatum and Tribe Polygonateae. Front Plant Sci. 13:882189.

 PubMed Web of Science ®Google Scholar

Miao J, Wang Y, Zhang Y, Tong L, Tang G, Xu X.,. 2020. The complete chloroplast genome sequence of Castanopsis sclerophylla (Lindl.) Schott (Fagaceae). Mitochondrial DNA B Resour. 5(3):2848–2849.

 PubMed Web of Science ®Google Scholar

Guo S, Liao X, Chen S, Liao B, Guo Y, Cheng R, Xiao S, Hu H, Chen J, Pei J, et al. 2022. A comparative analysis of the chloroplast genomes of four Polygonum medicinal plants. Front Genet. 13:764534.

 PubMed Web of Science ®Google Scholar

Sanchez-Puerta MV, Abbona CC. 2014. The chloroplast genome of Hyoscyamus niger and a phylogenetic study of the tribe Hyoscyameae (Solanaceae). PLoS One. 9(5):e98353.

 PubMed Web of Science ®Google Scholar

Jansen RK, Saski C, Lee S-B, Hansen AK, Daniell H. 2011. Complete plastid genome sequences of three Rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus. Mol Biol Evol. 28(1):835–847.

 PubMed Web of Science ®Google Scholar

Data availability statement

The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at [https://www.ncbi.nlm.nih.gov] (https://www.ncbi.nlm.nih.gov/) under the accession no. ON710841. The associated BioProject, SRA, and Bio-Sample numbers are PRJNA864116, SRR20726142, and SAMN30074217 respectively.”