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Mitochondrial DNA Part B
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Volume 8, 2023 - Issue 2
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Plastome Announcement

The complete chloroplast genome of Senna alata (L.) Roxb., an important medicinal plant from the Philippines

Kristine J. O. Quiñonesa Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
,
Renerio P. Gentallan Jr.a Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-6436-7878View further author information
ORCID Icon,
Michael C. B. Bartolomea Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
,
Roselle E. Madayaga Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, Philippines;c Agricultural Systems Institute, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
,
Juan R. A. Vera Cruza Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Angeleigh R. T. Cirunayb Institute of Food Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
,
Leah E. Endonelaa Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Emmanuel B. S. Timoga Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, Philippines;d Department of Forest Biological Sciences, College of Forestry and Natural Resources, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Teresita H. Borromeoa Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Nestor C. Altoverosa Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Bartimeus B. S. Alvarana Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, Philippines;b Institute of Food Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
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Jessabel B. Magtoltola Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, Philippines;c Agricultural Systems Institute, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
&
Reneliza D. Cejalvoa Institute of Crop Science, College of Agriculture and Food Science, University of the Philippines Los Baños, Los Baños,4031Laguna, PhilippinesView further author information
 show all
Pages 244-248 | Received 08 Sep 2022, Accepted 22 Jan 2023, Published online: 10 Feb 2023

Figures & data

Figure 1. Morphological characteristics of S. alata (ICROPS 2019 149) used for chloroplast genome sequencing; whole plant (a), inflorescence (b), floret (c) pod (d) and seed (e). (Photo source: ©CBGR Laboratory, ICropS, CAFS, UPLB).

Figure 1. Morphological characteristics of S. alata (ICROPS 2019 149) used for chloroplast genome sequencing; whole plant (a), inflorescence (b), floret (c) pod (d) and seed (e). (Photo source: ©CBGR Laboratory, ICropS, CAFS, UPLB).

Figure 2. Chloroplast genome map of S. alata. The map contains seven circles, where the first circle (from the center going outward) shows the distributed repeats connected with red (the forward direction) and green (the reverse direction) arcs. The second circle shows the tandem repeats marked with short bars. The next circle shows the microsatellite sequences as short bars. The fourth circle shows the size of the LSC and SSC. The fifth circle shows the IRA and IRB while the sixth circle shows the GC contents along the plastome. The seventh circle shows the genes having different colors based on their functional groups.

Figure 2. Chloroplast genome map of S. alata. The map contains seven circles, where the first circle (from the center going outward) shows the distributed repeats connected with red (the forward direction) and green (the reverse direction) arcs. The second circle shows the tandem repeats marked with short bars. The next circle shows the microsatellite sequences as short bars. The fourth circle shows the size of the LSC and SSC. The fifth circle shows the IRA and IRB while the sixth circle shows the GC contents along the plastome. The seventh circle shows the genes having different colors based on their functional groups.

Figure 3. Phylogenetic tree reconstructed using maximum likelihood (ML) method based on complete chloroplast genome sequences of the nine Fabaceae species. Numbers above the lines represent ML bootstrap values (>98%).

Figure 3. Phylogenetic tree reconstructed using maximum likelihood (ML) method based on complete chloroplast genome sequences of the nine Fabaceae species. Numbers above the lines represent ML bootstrap values (>98%).
Supplemental material

Supplemental Material

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Data availability statement

The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.govunder the accession no. ON653612. The associated BioProject, SRA, and Bio-Sample numbers are PRJNA867486, SRR20980268 and SAMN30201905, respectively.

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