Complete mitochondrial genome of the composting worm Dendrobaena veneta (Clitellata: Oligochaeta, Lumbricidae)

Figures & data

Figure 1. Clitellate specimen of Dendrobaena veneta. The photograph was taken in Piliscsaba, Hungary by the first author Csaba Csuzdi on 20 June 2022.

Figure 2. Circular sketch map of the Dendrobaena veneta mitogenome. The mitogenome map was generated using the GenBank format of the sequence (OQ763213) with the online Proksee software (Grant et al. 2023). From the inside to the outside, the innermost scale indicates the length, the inner circle indicates the GC skew, the Middle circle indicates the GC content, and the outer circle indicates gene arrangement. The plots of the GC content and GC skew were generated by default setting of the software (window 500, step 1). different colors represent different gene blocks.

Figure 3. Phylogenetic tree of the 26 species of the Megascolecidae and Lumbricidae. Phylogenetic trees were reconstructed using maximum-likelihood (ML) and Bayesian inference (BI) methods, based on the nucleotide sequence of 13 PCGs. The sequences used in the tree are listed in Table 1. The numbers at each node specify the BI posterior probability and ultrafast bootstrap support (%), respectively. The scale bar indicates the number of substitutions per site.

Table 1. List of metagynophora mitogenomes used in this study.

Species	Genbank No.	Genome	Reference
Eisenia nordenskioldi pallida	OM213998 OM213999	Complete	Csuzdi et al. 2023
Eisenia nordenskioldi	OL840314 MZ857200 OM687887	Complete	Zhao et al. 2022
Eisenia andrei	OK513069	Complete	Csuzdi et al. 2022
Eisenia fetida	OK513070	Complete	Csuzdi et al. 2022
Bimastos parvus	MZ857199	Complete	Liu et al. 2021
Octolasion tyrtaeum	MZ857201	Complete	Liu et al. 2021
Aporrectodea rosea	MK573632	Complete	Shekhovtsov and Peltek 2019
Aporrectodea trapezoides	OM687882	Complete	Unpublished
Aporrectodea caliginosa	CM035405	Complete	Unpublished
Aporrectodea caliginosa	OL840316 OL840317	Complete	Zhao et al. 2022
Aporrectodea tuberculata	OM687883 OM687884 OM687885 OM687886	Complete	Zhao et al. 2022
Lumbricus terrestris	U24570	Complete	Boore and Brown 1995
Lumbricus rubellus	MN102127	Complete	Zhang et al. 2019
Dendrobaena octaedra	MZ857197	Complete	Liu et al. 2021
Dendrobaena tellermanica	ON960857	Partial	Shekhovtsov et al. 2023
Dendrobaena veneta	OQ763213	Complete	This study
Tonoscolex birmanicus	KF425518	Complete	Wang et al. 2015
Amynthas deogyusanensis	OK558822	Complete	Koo and Hong 2023
Perionyx excavatus	EF494507	Complete	Unpublished

Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen C, Graham M, Van Domselaar V, Stothard P. 2023. Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res. 51(W1):W484–W492. doi: 10.1093/nar/gkad326.

 PubMed Web of Science ®Google Scholar

Csuzdi C, Koo J, Hong Y. 2023. Complete Mitochondrial genome of Eisenia nordenskioldi pallida Malevich, 1956 from Korea, with remarks on the phylogeny of the E. nordenskiodi complex (Megadrili; Lumbricidae). Zootaxa. 5255(1):82–92. doi: 10.11646/zootaxa.5255.1.12.

 PubMed Web of Science ®Google Scholar

Zhao H, Fan S, Aspe NM, Feng L, Zhang Y. 2022. Characterization of 15 earthworm mitogenomes from Northeast China and its phylogenetic implication (Oligochaeta: Lumbricidae, Moniligastridae). Diversity. 14(9):714. doi: 10.3390/d14090714.

 Google Scholar

Csuzdi C, Koo J, Hong Y. 2022. The complete mitochondrial DNA sequences of two sibling species of lumbricid earthworms, Eisenia fetida (Savigny, 1826) and Eisenia andrei (Bouche, 1972) (Annelida, Crassiclitellata): comparison of mitogenomes and phylogenetic positioning. Zookeys. 1097:167–181. doi: 10.3897/zookeys.1097.80216.

 PubMedGoogle Scholar

Liu H, Zhang Y, Xu W, Fang Y, Ruan H. 2021. Characterization of five new earthworm mitogenomes (Oligochaeta: Lumbricidae): mitochondrial phylogeny of Lumbricidae. Diversity. 13(11):580.

 Google Scholar

Shekhovtsov SV, Peltek SE. 2019. The complete mitochondrial genome of Aporrectodea rosea (Annelida: Lumbricidae). Mitochondrial DNA B Resour. 4(1):1752–1753. doi: 10.1080/23802359.2019.1610091.

 Web of Science ®Google Scholar

Boore JL, Brown WM. 1995. Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris. Genetics. 141(1):305–319. doi: 10.1093/genetics/141.1.305.

 PubMed Web of Science ®Google Scholar

Zhang Q, Liu H, Zhang Y, Ruan H. 2019. The complete mitochondrial genome of Lumbricus rubellus (Oligochaeta, Lumbricidae) and its phylogenetic analysis. Mitochondrial DNA B Resour. 4(2):2677–2678. doi: 10.1080/23802359.2019.1644242.

 PubMed Web of Science ®Google Scholar

Shekhovtsov SV, Vasiliev GV, Latif R, Poluboyarova TV, Peltek SE, Rapoport IB. 2023. The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position. Vavilovskii Zhurnal Genet Selektsii. 27(2):146–152.

 PubMed Web of Science ®Google Scholar

Wang AR, Hong Y, Win TM, Kim I. 2015. Complete mitochondrial genome of the Burmese giant earthworm, Tonoscolex birmanicus (Clitellata: Megascolecidae). Mitochondrial DNA. 26(3):467–468. doi: 10.3109/19401736.2013.830300.

 PubMed Web of Science ®Google Scholar

Koo J, Hong Y. 2023. The complete mitochondrial genome of the Korean endemic earthworm Amynthas deogyusanensis (Clitellata: Megascolecidae). Mitochondrial DNA B Resour. 8(1):107–109. doi: 10.1080/23802359.2022.2161839.

 PubMed Web of Science ®Google Scholar

Data availability statement

The genome sequence data that support the findings of this study are openly available in GenBank of NCBI under accession No. OQ763213. The associated BioProject, SRA, and Bio-Sample numbers are PRJNA769829, SRR24457999, and SAMN34844758, respectively.