The complete chloroplast genome of Hordeum marinum ssp. marinum

Figures & data

Figure 1. Species reference image of H. marinum ssp. marinum (voucher no. BTBU20220515) under cultivation are from our laboratory and photography by Suping Yu. (A) Hydroponic culture of H. marinum. (B) Seedlings of H. marinum during the stages of two leaves and one heart.

Figure 2. Circular genetic map of the chloroplast genome of H. marinum ssp. marinum. The map consists of three circles: the inner circle indicates the positions of the LSC, SSC, IRA, and IRB regions, respectively. The Middle circle represents the GC content. The outer circle displays genes of various functional categories, each depicted in different colors as illustrated in the lower left corner of the picture.

Figure 3. Phylogenetic tree inferred by ML method based on the complete chloroplast genome of 12 species. The complete chloroplast genomes of 11 species, including Hordeum brevisubulatum (MT386010) (Su et al. 2020), Hordeum vulgare (NC_056985), thinopyrum elongatum (NC_043841), Triticum aestivum (NC_002762) (Ogihara et al. 2002), secale cereale (NC_021761) (Middleton et al. 2014), avena sativa (NC_027468) (Saarela et al. 2015), brachypodium distachyon (NC_011032) (Bortiri et al. 2008), Oryza sativa (NC_031333), setaria italica (NC_022850), Zea mays (NC_001666) (Maier et al. 1995) and Sorghum bicolor (NC_008602) (Saski et al. 2007) were downloaded from NCBI (www.ncbi.nlm.nih.gov/).

Su X, Zhao J, Wang Z. 2020. The complete chloroplast genome of Hordeum brevisubulatum. Mitochondrial DNA B Resour. 5(3):2988–2989. doi:10.1080/23802359.2020.1797552.

 PubMed Web of Science ®Google Scholar

Ogihara Y, Isono K, Kojima T, Endo A, Hanaoka M, Shiina T, Terachi T, Utsugi S, Murata M, Mori N, et al. 2002. Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics. 266(5):740–746. doi:10.1007/s00438-001-0606-9.

 PubMed Web of Science ®Google Scholar

Middleton CP, Senerchia N, Stein N, Akhunov ED, Keller B, Wicker T, Kilian B. 2014. Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS One. 9(3):e85761. doi:10.1371/journal.pone.0085761.

 PubMed Web of Science ®Google Scholar

Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, et al. 2015. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. AoB Plants. 7:plv046. doi:10.1093/aobpla/plv046.

 PubMed Web of Science ®Google Scholar

Bortiri E, Coleman-Derr D, Lazo GR, Anderson OD, Gu YQ. 2008. The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes. BMC Res Notes. 1:61. doi:10.1186/1756-0500-1-61.

 PubMedGoogle Scholar

Maier RM, Neckermann K, Igloi GL, Kössel H. 1995. Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol. 251(5):614–628. doi:10.1006/jmbi.1995.0460.

 PubMed Web of Science ®Google Scholar

Saski C, Lee SB, Fjellheim S, Guda C, Jansen RK, Luo H, Tomkins J, Rognli OA, Daniell H, Clarke JL. 2007. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Theor Appl Genet. 115(4):571–590. doi:10.1007/s00122-007-0567-4.

 PubMed Web of Science ®Google Scholar

Data availability statement

The chloroplast genome sequence data supporting the findings of this study are publicly available in NCBI. The complete chloroplast genome of H. marinum ssp. marinum was submitted to GenBank with the accession number OR063947. The associated BioProject is PRJNA976964; the SRA number is SRR24757234; and the Bio-Sample number is SAMN35447610, respectively.