The complete chloroplast genome sequence of Rhamnella wilsonii Schneid (Rhamnaceae)

Figures & data

Figure 1. The species reference photographs of R. wilsonii. (A) The habitats of R. wilsonii; (B) the leaves and seeds of R. wilsonii. The photographs were taken by Gaini Wang from Danba, Sichuan Province, China (30°38′02″ N, 102°03′48″ E). Main identifying features: shrubs or small tree, petiole 3-7mm. The leaves are glabrous on both surfaces with 3–5 lateral veins on each side. Drupe is nearly cylindrical, 6-8mm in length, with a pedicel of 3–4mm.

Figure 2. The complete chloroplast genome map of R. wilsonii. The map consists of six tracks from outside to inside. The outermost track exhibits variably sized and colored boxes, symbolizing genes and their respective lengths. The outer and inner boxes within this track denote genes transcribed in a clockwise and counter-clockwise direction. The second track provides a depiction of the genomic GC content. The third track illustrates the structural composition of the chloroplast genome, including the LSC region, SSC region, and two IR regions. The fourth track shows short tandem repeats or microsatellite sequences through colored bars. The fifth track reveals long tandem repeats represented as concise blue bars. The innermost track indicates the sequence of forward and reverse repeats, connected by red and green arcs.

Figure 3. The ML tree based on the complete chloroplast genome of R. wilsonii and other 11 species of rhamnaceae, with Cannabis sativa and Morus Alba as outgroups. The number above the branch is bootstrap value. The following sequences were used: Berchemia berchemiifolia (NC037477) (Cheon et al. 2018); Berchemiella wilsonii (NC043912) (Li et al. 2019); Cannabis sativa) (KR184827) (Oh et al. 2016); Hovenia dulcis (MT225403) (Li et al. 2020); H. trichocarpa (MT225404) (Li et al. 2020); Morus Alba (KU355297) (Li et al. 2018); Rhamnella rubrinervis (ON881505); Rhamnus globosa (ON009012) (Xie et al. 2020); Rhamnus taquetii (NC045855) (Jin et al. 2020); Spyridium parvifolium (MH234313) (Clowes et al. 2018); Ziziphus jujuba (NC030299) (Ma et al. 2017); Z. mauritiana (KY628304) (Huang et al. 2017); Z. incurva (MN017132) (Wang et al. 2019).

Cheon K-S, Kim K-A, Yoo K-O. 2018. The complete chloroplast genome sequence of Berchemia berchemiifolia (Rhamnaceae). Mitochondrial DNA Part B Resour. 3(1):133–134. doi:10.1080/23802359.2018.1431068.

 PubMed Web of Science ®Google Scholar

Li Y, Wang J, Li P, Cheng S, Wang F. 2019. The complete chloroplast genome sequence of Berchemiella wilsonii (Rhamnaceae), an endangered endemic species. Mitochondrial DNA Part B. 4(1):452–454. doi:10.1080/23802359.2018.1555018.

 Web of Science ®Google Scholar

Oh H, Seo B, Lee S, Ahn D-H, Jo E, Park J-K, Min G-S. 2016. Two complete chloroplast genome sequences of Cannabis sativa varieties. Mitochondrial DNA Part A. 27(4):2835–2837. doi:10.3109/19401736.2015.1053117.

 PubMed Web of Science ®Google Scholar

Li M, Ye X, Bi H. 2020. Characterization of the complete chloroplast genome of two Hovenia species (Rhamnaceae). Mitochondrial DNA Part B Resour. 5(2):1731–1732. doi:10.1080/23802359.2020.1749177.

 Web of Science ®Google Scholar

Li Q, Yan N, Song Q, Guo J. 2018. Complete chloroplast genome sequence and characteristics analysis of Morus multicaulis. Chin J Bull Bot. 53(1):94. doi: 10.11983/CBB16247

 Google Scholar

Xie Y, Wang Z, Jiang X, Zhang X. 2020. The complete chloroplast genome of Rhamnus globosa (Rhamnaceae). Mitochondrial DNA Part B Resour. 5(3):2830–2831. doi:10.1080/23802359.2020.1791010.

 PubMed Web of Science ®Google Scholar

Jin D-P, Park J-W, Park J-S, Choi B-H. 2020. The complete plastid genome of Rhamnus taquetii, an endemic shrub on the Jeju Island of Korea. Mitochondrial DNA Part B Resour. 5(1):924–926. doi:10.1080/23802359.2020.1719933.

 PubMed Web of Science ®Google Scholar

Clowes C, Fowler RM, Brown GK, Bayly MJ. 2018. The complete chloroplast genome sequence of Spyridium parvifolium var. parvifolium (family Rhamnaceae; tribe Pomaderreae). Mitochondrial DNA Part B Resour. 3(2):807–809. doi:10.1080/23802359.2018.1483776.

 PubMed Web of Science ®Google Scholar

Ma Q, Li S, Bi C, Hao Z, Sun C, Ye N. 2017. Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae). Curr Genet. 63(1):117–129. doi:10.1007/s00294-016-0612-4.

 PubMed Web of Science ®Google Scholar

Huang J, Chen R, Li X. 2017. Comparative analysis of the complete chloroplast genome of four known Ziziphus species. Genes. 8(12):340. doi:10.3390/genes8120340.

 PubMed Web of Science ®Google Scholar

Wang Y, Hao J, Yuan X, Lu B. 2019. The complete chloroplast genome sequence of Ziziphus incurva. Mitochondrial DNA Part B Resour. 4(2):3465–3466. doi:10.1080/23802359.2019.1674706.

 PubMed Web of Science ®Google Scholar

Data availability statement

The data that support the findings of this study are openly available in NCBI GenBank at https://www.ncbi.nlm.nih.gov under accession number: OM876863. The associated BioProject, SRA, and BioSample numbers are PRJNA821616, SRR21151097, and SAMN27116178, respectively.