The complete mitochondrial genome of the sand bubbler crab Scopimera longidactyla Shen 1932 (Decapoda: Dotillidae) and its phylogenetic analysis

Figures & data

Figure 1. Specimen image of the sand bubbler crab, Scopimera longidactyla, collected from Daebu Island on the northwestern Coast of Korea. This photograph was taken by Dalyoung Kim in September 2022.

Table 1. List of accession number and publication used in the phylogenetic tree.

Family	Species	GenBank accession number	References
Dotillidae	Dotilla wichmanni	MH183129	Chen et al. (2018)
	Ilyoplax deschampsi	JF909979	Ji et al. (2014)
	Ilyoplax integra	LC715474	Kobayashi et al. (2023)
	Ilyoplax pusilla	LC715475	Kobayashi et al. (2023)
	Scopimera globosa	LC535358	Kobayashi et al. (2021)
	Scopimera intermedia	MW165226	Wang et al. (2021)
	Scopimera longidactyla	OR872329	Present study
	Tmethypocoelis choreutes	LC715478	Kobayashi et al. (2023)
Grapsidae (Outgroup)	Grapsus tenuicrustatus	KT878721	Sung et al. (2016)
	Pachygrapsus crassipes	KC878511	Yu et al. (2014)

Figure 2. The circular mitogenome map of Scopimera longidactyla (GenBank Accession No. OR872329). Genes encoded on the reverse strand and forward strand are illustrated inside the circle and outside the circle, respectively.

Figure 3. Maximum likelihood (ML) tree based on concatenated nucleotide sequences from all protein-coding genes of the complete mitogenomes of the family Dotillidae. Numeric values at nodes are ML bootstraps followed by the Bayesian posterior probabilities. The newly assembled mitogenome of the sand bubbler crab, Scopimera longidactyla was highlighted in bold. Two species, Pachygrapsus crassipes and Grapsus tenuicrustatus, belonging to the family Grapsidae, were selected as the outgroup. Scale bar represents nucleotide substitutions per site.

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Data availability

The data that support the findings of this study are openly available in GenBank of NCBI under the accession number OR872329. Raw reads have been deposited under NCBI BioProject (PRJNA1041591), BioSample (SAMN38288372), and SRA (SRR26857270).