The complete mitochondrial genome of Clonostachys farinosa (Bionectriaceae, Hypocreales)

Figures & data

Figure 1. Species reference photograph. (A) Colony morphology of Clonostachys farinosa strain CSC22A0184 on potato dextrose agar incubated at 25 °C in 7 days. The scale bar indicates 1 cm. (B) Lichen Parmotrema clavuliferum as an isolation source. The scale bar indicates 1 cm. Photograph by Seung-Yoon Oh.

Figure 2. Circular maps and genetic compositions of Clonostachys farinosa strain CSC22A0184. Genes are located outside and color-coded by the functional classification. GC contents are shown on the inner circle. The names of genes containing introns are marked with an asterisk, and the names of genes or ORFs assigned inside the intron are located inside the outer circle.

Figure 3. Maximum likelihood (ML) tree for 10 species within the order hypocreales based on 14 concatenated, conserved protein-coding genes (atp6, atp8, atp9, cob, cox1–3, nad1–6, and nad4L). The ML tree was constructed using the PROTGAMMA + MTZOA model and 1000 bootstrap replicates. The scale bar indicates the number of substitutions per site. The following mitogenomes were used for the analysis: Clonostachys rosea (Wang et al. 2017), C. compactiuscula, C. rogersoniana, C. solani, Clonostachys sp. YFCC 8591 (Zhao et al. 2021), Hapsidospora chrysogena (Eldarov et al. 2015), Emericellopsis fuci (Konovalova and Logacheva 2016), Trichoderma harzianum (Kwak 2021) and T. lixii (Venice et al. 2020). Accession numbers of GenBank are indicated after the species name.

Figure 4. The collinearity analysis of mitochondrial genomes of Clonostachys species. The diagram is generated using genoPlotR package (Guy et al. 2010) based on the mitochondrial genome used in the phylogenomic analysis. The color represents the type of gene features.

Table 1. Classification of intron and ORF annotated in the mitochondrial genome of Clonostachys farinosa.

No.	Name	Start position	End position	Type
1	cox1 intron 1	387	1642	Group IB
2	cox1 intron 2	1988	3045	Group IB
3	cox1 intron 3	3373	3604	Group IB
4	cox1 intron 4	3672	4779	Group IB
5	cox1 intron 5	4917	5929	Group IB
6	nad4 intron 1	9243	10606	Group IC2
7	cox3 intron 1	17095	18249	Group IB
8	rnl intron 1	23888	25665	Group IA
9	nad2 intron 1	35117	37609	Group II
10	nad5 intron 1	40908	42277	Group IB
11	cob intron 1	44928	47491	Group IB
12	ORF368	388	1494	LAGLIDADG
13	ORF329	1989	2978	LAGLIDADG
14	ORF399	3672	4727	LAGLIDADG
15	ORF265	4918	5715	GIY
16	ORF148	9245	10459	LAGLIDADG
17	ORF317	17095	18048	LAGLIDADG
18	ORF821	28676	29587	–
19	ORF177	43838	43906	–
20	ORF144	44043	44339	–
21	ORF400	45214	46416	LAGLIDADG
22	ORF179	46577	47116	GIY
23	ORF340	47685	48704	GIY
24	ORF240	50137	50841	–

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Data availability statement

The sequence generated from this study has been deposited to GenBank under accession number OQ205181. The associated BioProject, BioSample, and SRA numbers are PRJNA1092717, SAMN40632650, and SRR28478378, respectively.