Complete mitochondrial genome of Devario shanensis (Cypriniformes: Danionidae: Danioninae): genome characterization and phylogenetic consideration

Figures & data

Figure 1. Devario shanensis from the Nangun River in Cangyuan Prefecture, Yunnan province, China (23.2254° N, 98.9899° E). (photo by Xiao Jiang CHEN on 20 July 2022).

Table 1. Species names, corresponding GenBank accession numbers, and references for all 14 mitogenomes utilized in the reconstruction of the phylogenetic tree.

Species name	Accession number	Reference
Devario interruptus	MZ853154	Chen et al. 2023
Devario kakhienensis	OM732332	Song et al. 2022
Devario devario	AP011425	Tang et al. 2010
Microrasbora rubescens	AP011426	Tang et al. 2010
Betadevario ramachandrani	MH817023	Norén & Kullander 2018
Devario laoensis	KP115291	Zhang et al 2016
Danio nigrofasciatus	KR606519	Huang et al. 2016
Danio roseus	MZ853153	Song et al. 2022
Danio dangila	AP011235	Tang et al. 2010
Danio erythromicron	AP011419	Tang et al. 2010
Danio margaritatus	KT768120	Unpublished
Devario chrysotaeniatus	KP407138	Liu et al. 2016
Rhinogobius szchuanensis	OM617727	Liu et al. 2023

Figure 2. The mitochondrial genome gene map of devario shanensis displays the localization of genes situated on the heavy and light strands, with arrows pointing in opposite directions to indicate their transcriptional orientation. Genes encoded on the heavy strand are depicted outside the circle, while those on the light strand are shown inside.

Figure 3. Maximum-likelihood (ML) and Bayesian inference (BI) phylogenetic trees were constructed using complete mitochondrial genomes of Devario shanensis and 13 other fish species. The following sequences were used: MZ853154 (Chen et al. 2023), OM732332 (Song et al. 2022), AP011425 (Tang et al. 2010), AP011426 (Tang et al. 2010), MH817023 (Norén & kullander 2018), KP115291 (Zhang et al. 2016), KR606519 (Huang et al. 2016), MZ853153 (Song et al. 2022), AP011235 (Tang et al. 2010), AP011419(Tang et al. 2010), KT768120 (unpublished), KP407138 (Liu et al. 2016), rhinogobius szechuanensis OM617727 (Liu et al. 2023). ML bootstrap support values and Bayesian posterior probabilities were depicted above branches. Each species was accompanied by its GenBank accession number.

Chen XJ, Liu WZ, Song L, Liu HX. 2023. Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae). Mitochondrial DNA Part B Resour. 8(2):187–191. doi:10.1080/23802359.2022.2151831.

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Song L, Chen XJ, Han XP, Gu YW. 2022. Complete mitochondrial genome and phylogenetic analysis of Danio roseus (Teleostei, Cypriniformes, Danionidae.). Mitochondrial DNA Part B Resour. 7(2):350–352. doi:10.1080/23802359.2022.2030257.

 PubMed Web of Science ®Google Scholar

Tang KL, Agnew MK, Hirt MV, Sado T, Schneider LM, Freyhof J, Sulaiman Z, Swartz E, Vidthayanon C, Miya M, et al. 2010. Systematics of the subfamily Danioninae (Teleostei: Cypriniformes: Cyprinidae). Mol Phylogenet Evol. 57(1):189–214. doi:10.1016/j.ympev.2010.05.021.

 PubMed Web of Science ®Google Scholar

Norén M, Kullander S. 2018. The enigmatic Betadevario ramachandrani (Teleostei: cyprinidae: danioninae): phylogenetic position resolved by mitogenome analysis, with remarks on the prevalence of chimeric mitogenomes in GenBank. Cogent Biol. 4(1):1525857. doi:10.1080/23312025.2018.1525857.

 Web of Science ®Google Scholar

Huang Q, Ji X, Wang K. 2016. The complete mitochondrial genome of dwarf danio, Danio nigrofasciatus. Mitochondrial DNA Part A Resour. 27:2854–2855. doi:10.3109/19401736.2015.1053126.

 PubMed Web of Science ®Google Scholar

Liu L, Chen L, Wu YN, Wang XQ, Liao FC, Wang DW, Huang XQ, Deng SM, Liu LL. 2016. Base composition of the Danio chrysotaenitus complete mitochondrial genome. Mitochondrial DNA Part A Resour. 27(5):3370–3371. doi:10.3109/19401736.2015.1018225.

 PubMed Web of Science ®Google Scholar

Liu WZ, Song L, Chen XJ, Liu HX. 2023. The complete mitochondrial genome of Rhinogobius szechuanensis (Gobiiformes: ggobiidae: gobionellinae). Mitochondrial DNA Part B Resour. 8(2):192–196. doi:10.1080/23802359.2023.2167473.

 PubMed Web of Science ®Google Scholar

Song L, Chen XJ, Zhang S, Wang Q. 2022. Complete mitochondrial genome of Devario kakhienensis (Cypriniformes: Danionidae: Danioninae): genome characterization and phylogenetic consideration. Mitochondrial DNA Part B. 7(9):1685–1687. doi:10.1080/23802359.2022.2122749.

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Data availability statement

The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at (https://www.ncbi.nlm.nih.gov/) under the reference number OM678439.

The associated "BioProject", "Bio-Sample" and "SRA" numbers are PRJNA808163, SAMN26029380, and SRR18063683 respectively.