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Addendum

Designing industrial yeasts for the consolidated bioprocessing of starchy biomass to ethanol

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Pages 97-102 | Published online: 01 Mar 2012

Figures & data

Figure 1. Predicted protein sequence of the sGAI gene of A. awamori (GenBank:JX559863) expressed in S. cerevisiae Y294[ySYAG]. The XYNSEC secretion signal is indicated in bold font. The sequence identified in glucoamylases essential for raw starch hydrolysis was conserved (PL(W-597)YVTVTLPA),Citation19 as well as the second tryptophan (Trp) residue and is double underlined in gray text. The Gp-I region is indicated as text in italics bold. The Cp-I region or Starch Binding Domain is indicated in underlined text.Citation25 The general acid and base catalysts Glu-213 and Glu-434, as well as Tyr-85, Trp-87, Arg-89, Asp-90, Trp-154, Glu-214, Arg-339, Asp-343, Trp-351 sites, which play a role in substrate transition-state stabilization and/or ground-state binding, are indicated in gray text. Likely N-glycosylation sites are underlined by a broken line, although only the first and third sites were found to be glycosylated when expressed in yeast.Citation26

Figure 1. Predicted protein sequence of the sGAI gene of A. awamori (GenBank:JX559863) expressed in S. cerevisiae Y294[ySYAG]. The XYNSEC secretion signal is indicated in bold font. The sequence identified in glucoamylases essential for raw starch hydrolysis was conserved (PL(W-597)YVTVTLPA),Citation19 as well as the second tryptophan (Trp) residue and is double underlined in gray text. The Gp-I region is indicated as text in italics bold. The Cp-I region or Starch Binding Domain is indicated in underlined text.Citation25 The general acid and base catalysts Glu-213 and Glu-434, as well as Tyr-85, Trp-87, Arg-89, Asp-90, Trp-154, Glu-214, Arg-339, Asp-343, Trp-351 sites, which play a role in substrate transition-state stabilization and/or ground-state binding, are indicated in gray text. Likely N-glycosylation sites are underlined by a broken line, although only the first and third sites were found to be glycosylated when expressed in yeast.Citation26

Figure 2. Glucoamylases production by wild type and recombinant S. cerevisiae strains. (A) Hydrolysis of raw starch appears as clear zones around S. cerevisiae colonies secreting functional glucoamylases; strain (a) Y294 (reference), (b) Y294[yASAG] secreting the native GAI, (c) Y294[ySYAG] secreting the codon-optimized sGAI, were grown for 4 d on agar containing raw starch and then stained with iodine solution. (B) Glucoamylase and α-amylase activities of the strains Y294[yASAG] and Y294[ySYAG]; glucoamylase activity, determined at pH 5.4 and 30°C, was reported as nanokatals per gram dry cell weight (nKat/g DCW), which is the enzyme activity needed to produce 1 nmol of glucose per second per gram dry cell weight. α-amylase activity, detected at pH 5.4 and 50°C, was expressed as Ceralpha Units per gram dry cell weight (CU/g DCW), which is the enzyme activity required to release 1 micromol p-nitrophenyl per min per gram dry cell weight.

Figure 2. Glucoamylases production by wild type and recombinant S. cerevisiae strains. (A) Hydrolysis of raw starch appears as clear zones around S. cerevisiae colonies secreting functional glucoamylases; strain (a) Y294 (reference), (b) Y294[yASAG] secreting the native GAI, (c) Y294[ySYAG] secreting the codon-optimized sGAI, were grown for 4 d on agar containing raw starch and then stained with iodine solution. (B) Glucoamylase and α-amylase activities of the strains Y294[yASAG] and Y294[ySYAG]; glucoamylase activity, determined at pH 5.4 and 30°C, was reported as nanokatals per gram dry cell weight (nKat/g DCW), which is the enzyme activity needed to produce 1 nmol of glucose per second per gram dry cell weight. α-amylase activity, detected at pH 5.4 and 50°C, was expressed as Ceralpha Units per gram dry cell weight (CU/g DCW), which is the enzyme activity required to release 1 micromol p-nitrophenyl per min per gram dry cell weight.

Table 1. Glucoamylolytic activity (nKat/DCW) of the engineered S. cerevisiae F2 and F6 strains once grown in YPD broth for 72 h

Figure 3. Effect of the temperature on the aerobic growth of S. cerevisiae 27P (♦), F2 (□) and F6 (Δ) incubated at 30°C (A) and 37°C (B) in soluble starch (20 g/L) medium.

Figure 3. Effect of the temperature on the aerobic growth of S. cerevisiae 27P (♦), F2 (□) and F6 (Δ) incubated at 30°C (A) and 37°C (B) in soluble starch (20 g/L) medium.

Table 2. Ethanol production by S. cerevisiae strains engineered for the multiple integration of amylolytic genes.

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