Gene expression pattern for putative chloroplast localized COPII related proteins with emphasis on Rab related proteins

Figures & data

Figure 1. Biclustering of gene expression of putative chloroplast localized COPII related proteins at different developmental stages. The Arabidopsis proteins were all retrieved from a previous study where full names and more in depth information of each protein can be found.¹ Bioclustering data were retrieved from Genevestigator with the threshold set to 20%, black squares being above and white squares being below the threshold, respectively. Binary matrix density was 0.944.

Table 1. Gene expression for putative chloroplast localized Rab related proteins. The percent of gene expression for Rab related proteins at ten different individual developmental stages were highlighted giving numbers correlated with different percent interval data from Genevestigator. 1, 0–16%; 2, 17–33%; 3, 34–50%; 4, 51–66%; 5, 67–83%, 6, 84–100%

Putative chloroplast localized Rab related proteins (Accession number)	Germinated seed	Seedling	Young rosette	Developed rosette	Bolting	Young flower	Developed flower	Flowers and siliques	Mature siliques	Senescence
RabA5e (At1g05810) ^1	5	4	4	4	4	4	4	3	2	4
RabB1c (At4g35860) ^1	4	3	3	4	4	3	3	4	4	6
RabF1 (At3g54840) ^1	4	3	3	4	4	4	4	4	4	5
Rab GAP1 (At5g53570) ^2	4	4	4	4	4	4	4	4	4	3
Rab GAP2 (At4g13730) ^2	3	3	3	4	3	3	2	2	4	5
Rab GAP3 (At3g49350) ^2	4	4	3	4	3	4	3	2	3	2
Rab GAP4 (At5g24390) ^2	2	3	2	1	2	2	2	2	2	2
PRA1.B4 (At2g38360) ^3	4	4	3	4	3	4	4	4	4	2
PRA1.B1 (At3g56110) ^3	5	5	4	5	5	5	5	5	4	3
PRA1.B6 (At5g07110) ^3	4	4	3	3	3	3	3	3	2	1
PRA1.F3 (At3g13720) ^3	5	4	4	5	4	4	4	4	4	5
PRA1.F4 (At3g13710) ^3	4	4	3	4	4	3	4	4	4	4
PRA1.G2 (At5g56230) ^3	3	4	4	4	3	4	4	3	4	1

1Rab GTPase, 2GAP, GTPase activating protein; 3PRA1, putative Rab receptor.

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