Primer Exchange Reaction-Synthesized DNAzyme for the Sensitive Determination of an Oral Cancer Protein Biomarker

Abstract

A novel biosensing method is reported for the fluorescence determination of an oral cancer protein biomarker using primer exchange reaction (PER)-synthesized DNAzyme. Specifically, the target protein is captured by antibody-functionalized magnetic beads and recruits antibody-nucleic acid probes through immunoreactions to form sandwich-like complexes. After magnetic separation, the nucleic acid part of the antibody-nucleic acid probe participates in the PER as a catalytic hairpin, mediating the extension of primers. The extended primer forms the complete sequence of RNA-cleaving DNAzyme to effectively catalyze the cleavage of molecular beacons and produce a significantly amplified fluorescence signal. Taking interleukin 6 as a model biomarker, the method allows quantitative determination of the target in a wide linear range from 5 fg/mL to 500 pg/mL with a detection limit of 2.3 fg/mL and shows desirable specificity and usability in biological samples. More importantly, the complete DNAzyme is synthesized by the target-powered PER, which not only ensures the detection specificity, but also enables the decrease of background signals, thus greatly improving the sensitivity. Therefore, the method may provide a valuable tool for the determination of oral cancer protein biomarkers and may expand applications of DNAzyme in biosensing.

Keywords:

• Fluorescence
• interleukin 6
• primer exchange reaction
• RNA-cleaving DNAzyme

Additional information

Funding

This work was supported by the Key Research and Development Project of Sichuan Province under Grant 2020YFS0180.