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Research Article

Isolation and identification of compounds from Kalanchoe pinnata having human alphaherpesvirus and vaccinia virus antiviral activity

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Pages 1586-1591 | Received 26 Oct 2016, Accepted 19 Mar 2017, Published online: 11 Apr 2017

Abstract

Context: Kalanchoe pinnata (Lam.) Pers. (Crassulaceae) is a succulent plant that is known for its traditional antivirus and antibacterial usage.

Objective: This work examines two compounds identified from the K. pinnata plant for their antivirus activity against human alphaherpesvirus (HHV) 1 and 2 and vaccinia virus (VACV).

Materials and methods: Compounds KPB-100 and KPB-200 were isolated using HPLC and were identified using NMR and MS. Both compounds were tested in plaque reduction assay of HHV-2 wild type (WT) and VACV. Both compounds were then tested in virus spread inhibition and virus yield reduction (VYR) assays of VACV. KPB-100 was further tested in viral cytopathic effect (CPE) inhibition assay of HHV-2 TK-mutant and VYR assay of HHV-1 WT.

Results: KPB-100 and KPB-200 inhibited HHV-2 at IC50 values of 2.5 and 2.9 μg/mL, respectively, and VACV at IC50 values of 3.1 and 7.4 μg/mL, respectively, in plaque reduction assays. In virus spread inhibition assay of VACV KPB-100 and KPB-200 yielded IC50 values of 1.63 and 13.2 μg/mL, respectively, and KPB-100 showed a nearly 2-log reduction in virus in VYR assay of VACV at 20 μg/mL. Finally, KPB-100 inhibited HHV-2 TK- at an IC50 value of 4.5 μg/mL in CPE inhibition assay and HHV-1 at an IC90 of 3.0 μg/mL in VYR assay.

Discussion and conclusion: Both compounds are promising targets for synthetic optimization and in vivo study. KPB-100 in particular showed strong inhibition of all viruses tested.

View correction statement:
Corrigendum

Introduction

Human alphaherpesvirus (HHV) 1 and 2 (commonly known as herpes simplex viruses types 1 and 2) are DNA viruses responsible for a number of infections including orolabial and genital lesions, localized and disseminated infection in neonates, encephalitis, gingivostomatitis, keratoconjunctivitis, herpes gladitorum, herpes whitlow and treatment-resistant infection of immunocompromised persons. As of 2012, an estimated 3.7 billion and 417 million people worldwide, between the ages of 15 and 49 years, were infected with HHV-1 and HHV-2, respectively (Looker et al. Citation2015a,Citationb). The drug acyclovir (ACV) is the most commonly used treatment for both primary and recurrent HHV infections, including prophylactic treatment to mitigate recurrent infections and, in the case of the ACV prodrug valacyclovir, to prevent asymptomatic transmission. A long-term developing issue surrounding the use of ACV is the appearance of drug-resistant virus mutants. ACV-resistant HHV is rare (0.27%) in immunocompetent adults, but in a study in the Netherlands ACV-resistant isolates were much more common (7–14%) in immunocompromised adults (Stránská et al. Citation2005). It is generally recognized that ACV-resistance is highly prevalent in HIV-infected patients.

Following drug entry into cells, ACV is tri-phosphorylated and then blocks the activity of virus-specific DNA polymerase. Phosphorylation to the monophosphate level, beginning the phosphorylation chain, is usually carried out by the virus-specific enzyme thymidine kinase (TK). If this enzyme is deficient or mutated to inactivity, the virus becomes ACV resistant. Reports indicate approximately 95% of acyclovir-resistant HHV strains carry a mutant TK gene (Pottage & Kessler Citation1995; Stránská et al. Citation2004). TK-negative and TK-low producer mutants are also resistant to other ACV derivatives such as penciclovir (Gilbert et al. Citation2002). Viral mutations in the UL23 gene are responsible for the TK-negative or TK-low producer status of these ACV-resistant strains (Coen & Schaffer Citation1980). Foscarnet and cidofovir are second-line treatments for ACV-resistant, or nucleoside analog-resistant HHV strains, and are also used to treat other herpes viruses such as human cytomegalovirus (CMV) (Oberg Citation1989; Castelo-Soccio et al. Citation2010). However, these polymerase inhibitors have low bioavailability that limits their usage to intravenous administration and they are highly nephrotoxic (Deray et al. Citation1989; Izzedine et al. Citation2005). It is important to find anti-herpes drugs that inhibit ACV-resistant clinical strains.

Vaccinia virus (VACV) is a member of the Poxviridae family and is closely related to variola virus (VARV), the causative agent of smallpox (Moss Citation2013). VACV is a useful proxy for in vitro and in vivo study when evaluating therapeutic potential of prospective VARV treatments (CDER Citation2007). Classically, VACV strains have been used successfully as live smallpox vaccines to eradicate VARV infections. They are largely innocuous except in cases of host immune deficiency. In some immune deficient patients, symptoms of generalized Vaccinia including skin lesions occur (James et al. Citation2006). Complications of smallpox vaccination also included accidental autoinfection, spread to casual contacts, generalized Vaccinia, eczema vaccinatum, postvaccinal encephalopathy, roseola Vaccinia and progressive Vaccinia (Lane et al. Citation1969; Bray & Wright Citation2003).

Smallpox is a category A biological threat and concerns exist that it could be used as a weapon of mass destruction. The Institute of Medicine (Institute of Medicine (US) Committee on the Assessment of Future Scientific Needs for Live Variola Virus Citation1999) recommended that at least two antiviral drugs be developed and stockpiled to defend against the threat of VARV being used as a weapon of bioterrorism (LeDuc et al. Citation2002). Tecovirimat, a small molecule with activity against orthopoxviruses, is the safest and most effective treatment of VARV that has been validated to date (Mucker et al. Citation2013). It is important to find additional anti-pox therapeutic agents that could be used in the event of smallpox outbreaks and complications following the possible re-introduction of live VACV vaccines to the public.

Extracts, fractions and identified compounds from Kalanchoe pinnata have previously shown activity against a number of DNA and RNA viruses, including HHV-1 and HHV-2 (Supratman et al. Citation2001; Greer et al. Citation2010; Aoki et al. Citation2014). Traditionally, K. pinnata has been used as a medicinal plant to treat a range of diseases including bacterial infections, cancer and inflammation throughout areas where the plant grows natively.

In this report, we describe our studies on the anti-HHV-2 and anti-VACV activities of two compounds, KPB-100 and KPB-200, obtained from the roots of K. pinnata (Lam.) Pers. (Crassulaceae). Both compounds were found to be inhibitors of both viruses. Additionally, we describe the anti-HHV-1 activity of KPB-100.

Materials and methods

Plant tissue collection and extraction

The plant tissue collection and organic chemical extraction procedure of K. pinnata roots have been previously described (Greer et al. Citation2010). In the current study, components in the extracts were subjected to further separation and purification by HPLC.

Isolation and identification

High-performance liquid chromatography (HPLC): K. pinnata extracts were analyzed on an Agilent 1100 HPLC system, and the fractions were separated and collected by Agilent 1200 fraction collector (model G1364C). Analytical columns Phenomenex Luna (2) (4.6 × 150 mm 3 um) were used for the separation with mobile phase acetonitrile and water. The UV detector at wavelength of 254 nm was used.

Mass Spectrometry (MS): The MS data for KPB-100 were collected on an Orbitrap LC-MS in ion-mode with electrospray ionization (ESI). The sample was prepared using a small amount of the NMR sample (acetone-d6 solvent) dissolved in a solution of 99.9% acetonitrile, 0.1% formic acid. The MS data for KPB-200 were collected on an Agilent MSD time-of-flight instrument with ESI. The sample was prepared using a small amount of the NMR sample (D2O solvent) dissolved in H2O to back-exchange the deuterated alcohols with hydrogen.

Nuclear magnetic resonance spectroscopy (NMR): NMR data were collected on a Varian NMR-S 500 MHz console using a Varian broadband probe with pulsed-field gradients and a sample temperature of 294 K. Chemical shifts are reported in delta (δ) units, in parts per million (ppm) downfield from the reference compound. Compound KPB-200 was dissolved in D2O with a reference compound of 4,4-dimethyl-4-silapentane-1-sulfonic acid (DSS). Compound KPB-100 was dissolved in acetone-d6 with a reference compound of tetramethylsilane (TMS). The concentration of KPB-100 was too low to obtain a directly acquired carbon-13 spectrum (13 C NMR), so the 13 C chemical shifts were obtained from indirectly acquired 2D NMR spectra. Final structures were determined using 2D NMR.

Plaque reduction assays

Standard plaque reduction assay to determine anti-HHV-2 WT activity: Testing of KPB-100 and KPB-200 for antiviral activity was performed against HHV-2 WT as previously described (Greer et al. Citation2010). KPB-100 and KPB-200 were diluted in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 0.11% sodium bicarbonate, 5% Cosmic calf serum (Hyclone), 10 mM HEPES buffer and 50 μg/mL gentamicin. Cell monolayers of C1008 cells in 24-well culture plates (Corning) were exposed to drug at varying concentrations, infected with HHV-2, strain G (ATCC VR-734), at a multiplicity of infection (MOI) 0.001, incubated at 36 °C, then processed by fixation and immunoperoxidase staining (Luker et al. Citation1991). The plaques were observed microscopically and counted. Virus controls were included in addition to drug toxicity controls. End points of drug activity were expressed as 50% inhibitory concentration (IC50) values and were calculated by regression analysis.

Viral CPE inhibition assay to determine KPB-100 anti-HHV-2 TK-mutant activity: HHV-2 thymidine kinase mutant (TK-minus; TK-), CI-10161 was a patient isolate obtained on 11 November 1986 from Bruce Ronnie at Burrows Welcome. It was amplified one time in MA-104 cells. HHV-2 TK- CI-1253 (18 February 1991) was a patient isolate obtained on 05 February 1992 from Bruce Ronnie at the department of medicine at the University of British Colombia and amplified one time in Vero cells. HHV-2 (E194) was the standard wild-type E194 strain from the USU archives. KPB-100 was suspended in water (100 μg/mL). It was diluted 1/2 in minimum essential medium (MEM) solution, then diluted down further in half-log dilutions in MEM solution with 50 μg/mL gentamicin and 2% foetal bovine serum. Each dilution was added to 5 wells of a 96-well plate with an overnight monolayer of 80–100% confluent Vero-76 cells. Acyclovir and cidofovir were tested in parallel as controls. Three wells of each dilution were then infected with virus, and two wells remained uninfected as toxicity controls. The MOI was approximated 0.001 for CI-1253, 0.002 for CI-10161 and 0.017 for E194. When untreated virus control wells reached near complete cytopathic effect (CPE), which was day-four post-infection in each case, plates were stained with neutral red dye (which measures cell viability, thus can be used for quantifying the vitality of both virus-infected and uninfected, drug-treated cell cultures) for approximately 2 h, then supernatant dye was removed and the incorporated dye was extracted in 50:50 Sorensen citrate buffer/ethanol, then read on a spectrophotometer at 540 nm. Optical density (OD) values were normalized based on cell and virus controls, then IC50, 50% cytotoxic concentration (CC50) values, and Selectivity Index (SI) were calculated by regression analysis.

Plaque reduction assay to determine anti-VACV activity: KPB-100 and KPB-200 were suspended in water (100 μg/mL). Vero-76 cells were seeded to 24-well plates for KPB-100 and 12-well plates for KPB-200 and grown overnight to near confluence. Each well was then inoculated with a 1/3200 dilution of VACV (WR), obtained from ATCC, for KPB-100 and a 1/1000 dilution of the virus for KPB-200 and incubated for 1 hour to allow for infection. KPB-100 and KPB-200 were then diluted in MEM solution containing 2% FBS to 20, 6.3, 2.0, 0.063, 0.2, 0.63, 0.02 and 20, 10, 5, 2.5, 1.25, 0.63, 0.31, 0.156 μg/mL, respectively, and each dilution added to duplicate virus-infected wells. An identical plate was run in parallel without virus to test for cytotoxicity of KPB-100 but was not run for KPB-200 due to limited material availability. Plates were incubated at 37 °C with 5% CO2 for 3 days, and then plaques were counted under a microscope. Small satellite plaques that emerged after day two of incubation were excluded. Cidofovir was tested in parallel as a positive control. KPB-100 toxicity plates were stained with neutral red dye for approximately 2 h, then supernatant dye was removed and the incorporated dye was extracted in 50:50 Sorensen citrate buffer/ethanol, then read on a spectrophotometer, and OD values were compared to untreated control wells. KPB-200 toxicity was estimated by visual inspection of infected wells in areas of the cells where viral plaques were not present. OD values were normalized based on cell and virus controls; the IC50 and CC50 were calculated by regression analysis.

HHV-1 VYR assay

A viral CPE inhibition assay was first performed using a similar methodology as earlier HHV-2 TK-mutant assays. Vero-76 cells were infected with a 1/50 dilution of HHV-1 (v2424). KPB-100 was suspended in water at 100 μg/mL and diluted in 2× MEM solution containing 4% FBS at varying concentrations. Supernatant fluid was then collected from each compound concentration and tested for virus titre using a standard endpoint dilution of 50% cell culture infectious dose (CCID50) assay in quadruplicate wells. Titre calculations were done using the Reed–Muench (Reed & Muencha 1948) equation. The concentration of compound required to reduce virus yield by 1 log10 or 90% (IC90 value) was calculated by regression analysis. Generally, the IC90 value obtained by VYR assay approximates an IC50 value obtained by either plaque reduction or CPE inhibition assay. IC50 values for VYR (twofold reduction in virus titre) are usually not reported, because this is insignificant reduction in virus yield and does not result in protection of cells from virus-induced CPE.

VACV spread inhibition assay

HeLa cells were seeded into 96-well plates. After 24 h, cells were infected with VACV WR-GFP virus (VV.NP-S-EGFP). GFP expressed from the viral genome is targeted to nucleus with nuclear localization signal (Earl et al. Citation2003; Johnson et al. Citation2008). KPB-100 and KPB-200 were then diluted in MEM solution to 16, 4, 1, 0.25 μg/mL. Plates were incubated at 37 °C for 24 h. Cells were fixed with 4% formaldehyde and stained with DAPI (binds to DNA). Cytosine arabinoside (cytarabine, 46 μg/mL) was used as a positive control to inhibit virus spread. When cytarabine is used, no new virus is produced after the initial GFP positive cells, which is 0% spread. In the absence of inhibitor, virus spread will cause secondary infection and hence increase in GFP positive cells (100% spread). Cells were scanned and analyzed using ArrayScan High Content Platform as previously described (Johnson et al. Citation2008). IC50 was calculated using per cent spread relative to cytarabine control, where 0% spread is defined as 100% inhibition.

VACV VYR assay

HeLa cells seeded into 48-well plates were infected with VACV WR-GFP. The cells were washed 1 h post-infection and harvested (for input) or incubated in the absence and the presence of KPB-100 and KPB-200 (20, 10, 5, 2.5 and 1.25 μg/mL) for 24 h at 37 °C. Cells were harvested, lysed by three freeze-thaw cycles and virus yield was determined by plaque assay in BS-C-40 cells. Plaques were stained by crystal violet and quantitated 48 h after infection. The increase in virus yield was calculated by subtracting the 24 h titre with input viral titre. The concentration of compound required to reduce virus yield by 1 log10 or 90% (IC90 value) was calculated by regression analysis.

Results

Mass spectrometry

KPB-100 The base peak was 529.2055 (M–Na+) with a prominent peak at 545.1793 (M–K+) which both yield a high-res m/z of 506.2156; which produces an empirical formula of C26H34O10.

KPB-200 The base peak was 484.1624 (M–H+) with a prominent peak at 984.3432 (2 M–NH4+) which both yield a high-res m/z of 483.1531.

Nuclear magnetic resonance spectroscopy

Proton nuclear magnetic resonance (1 H NMR) data are reported as follows: s (singlet), d (doublet), dd (doublet of doublet), ddd (doublet of doublet of doublet), m (multiplet). Coupling constants are reported in Hertz (Hz).

KPB-100 1 H NMR (500 MHz, D2O) δ 6.91 (d, J = 1.9 Hz, 1 H), 6.78 (d, J = 7.9 Hz, 1 H), 6.69 (s, 1 H), 6.63 (dd, J = 7.9,1.9 Hz, 1 H), 6.25 (s, 1 H), 4.15 (d, J = 7.2 Hz, 1 H), 4.10 (d, J = 10.6 Hz, 1 H), 4.03 (dd, J = 9.6, 2.4 Hz, 1 H), 3.81 (s, 3 H), 3.81 (d, J = 11.2 Hz, 1 H), 3.78 (s, 3 H), 3.74 (d, J = 4.2 Hz, 2 H), 3.50 (s, 3 H), 3.50 (m, 1 H), 3.36 (dd, J = 8.6, 8.6 Hz, 1 H), 3.26 (dd, J = 8.5, 7.3 Hz, 1 H), 3.20 (dd, J = 9.6, 3.1 Hz, 1 H), 3.17 (dd, J = 11.2, 10.0 Hz, 1 H), 2.91 (dd, J = 15.9, 11.5 Hz, 1 H), 2.81 (dd, J = 15.9, 4.5 Hz, 1 H), 2.02 (m, 1 H), 1.92 (m, 1 H)

13C NMR (125 MHz, D2O) δ 147.8, 147.6, 147.4, 145.0, 137.3, 132.6, 129.5, 121.9, 115.0, 114.0, 113.4, 111.8, 104.5, 76.7, 73.6, 70.0, 67.8, 65.5, 63.7, 55.6, 55.4, 55.2, 46.8, 44.7, 38.4, 32.9

KPB-200 1H NMR (500 MHz, (CD3)2CO) δ 6.10 (m, 1 H), 6.02 (s, 2 H), 6.00 (m, 1 H), 5.99 (m, 1 H), 5.08 (d, J = 7.7 Hz, 1 H), 4.74 (dd, J = 11.9, 2.5 Hz, 1 H), 4.46 (dd, J = 11.9, 9.6 Hz, 1 H), 3.94 (ddd, J = 9.4, 9.4, 2.5 Hz, 1 H), 3.78 (s, 6 H), 3.65 (dd, J = 9.0, 9.0 Hz, 1 H), 3.59 (dd, J = 9.0, 7.6 Hz, 1 H), 3.52 (dd, J = 9.4, 9.4 Hz, 1 H), 3.48 (s, 3 H)

13C NMR (125 MHz, (CD3)2CO) δ 170.7, 163.6, 160.7, 160.5, 150.3, 143.8, 121.9, 110.1, 101.8, 99.8, 98.3, 97.3, 78.5, 76.4, 75.6, 73.7, 66.7, 58.9, 57.9

Compound structures

See .

Figure 1. Compound structures.

Figure 1. Compound structures.

Standard plaque reduction assay against HHV-2 WT

KPB-100 and KPB-200 were evaluated for their HHV-2 WT activity in a plaque reduction assay where they yielded IC50 values of 2.5 and 2.9 μg/mL, respectively.

Viral CPE inhibition assay against HHV-2 TK-

KPB-100, acyclovir and cidofovir were evaluated for their activity against HHV-2 TK- in a viral CPE inhibition assay where they yielded mean IC50 values of 4.55, 12.2 and 0.71 μg/mL, respectively (). In the same series against HHV-2 WT, KPB-100, acyclovir and cidofovir yielded IC50 values of 5.4, 0.49 and 4.3 μg/mL, respectively.

Table 1. Anti-HHV-2 activity of compounds from K. pinnata roots in plaque reduction assays.

VYR assay against HHV-1

KPB-100 was evaluated for its activity against HHV-1 WT in a VYR assay where it yielded an IC90 value of 3.0 μg/mL.

Plaque reduction assay against VACV

KPB-100, KPB-200 and cidofovir were evaluated for their activity against VACV in a plaque reduction assay where they yielded IC50 values of 3.1, 7.4 and 9.7 (mean) μg/mL, respectively. No toxicity at the 50% level was observed for either compound up to 20 μg/mL (as measured by neutral red uptake into cells), but 20% toxicity was estimated visually with 20 μg/mL of KPB-100, while no toxicity was seen with the diluent control (20% water in MEM).

VACV spread inhibition assay

In a VACV spread inhibition assay, KPB-100 and KPB-200 yielded IC50 values of 1.63 and 13.19 μg/mL, respectively. At 16 μg/mL of both the compounds yielded negative spread relative to cytarabine of −98.5 and −63.2, respectively ().

Table 2. Anti-VACV activity of compounds from K. pinnata roots in virus spread inhibition assay.

VACV VYR assay

In a VACV yield inhibition assay, KPB-100 at a concentration of 20 μg/mL had a nearly two-log reduction in virus titre compared to control (). While both compounds were found to be active, similar to plaque reduction assay, KPB-100 exhibited higher inhibition than KPB-200.

Figure 2. VACV VYR assay. Units for virus yield are plaque forming units per millilitre (pfu/mL). Concentration of compounds in μg/mL.

Figure 2. VACV VYR assay. Units for virus yield are plaque forming units per millilitre (pfu/mL). Concentration of compounds in μg/mL.

Discussion

Crude extracts and isolated compounds from K. pinnata leaves, aerial parts and roots have previously shown activity against a variety of viruses including HHV-1, HHV-2, Epstein-Barr and hepatitis C (Supratman et al. Citation2001; Greer et al. Citation2010; Aoki et al. Citation2014). Kalanchoe pinnata has been used as a traditional medicinal plant to treat a range of diseases including bacterial infections, cancer, and inflammation, and the Kalanchoe genus generally has been the subject of a number of in vitro and in vivo studies. Identified compounds with antivirus activity from K. pinnata include flavonoids, phenols and bufadienolides (Supratman et al. Citation2001; Aoki et al. Citation2014). This paper reported for the first time the anti-VACV activity for any compound or fraction from K. pinnata, and the anti-HHV activity of scaphopetalone, KPB-100 as well.

In plaque reduction assays KPB-100 and KPB-200 were shown to be low μg/mL inhibitors of HHV-2 WT. Upon further testing, KPB-100 was approximately as potent against TK- strains as it was against the WT(E194) strain, whereas acyclovir potency was markedly lower in TK- isolates compared to the WT. Cidofovir showed greater potency against the TK- isolates than against the WT HHV. KPB-100 was also a potent inhibitor of HHV-1 in VYR assay. Further in vitro testing will assess the spectrum of utility of KPB-100 against TK-negative and Tk-low producer strains, as well as studying KPB-200 against TK-negative strains.

KPB-100 and KPB-200 were assessed for their activity against VACV in plaque reduction assays with cidofovir as a positive control. All compounds tested were potent at low μg/mL concentrations, with KPB-100 being the strongest inhibitor. Similarly, in virus yield inhibition assay, both KPB-100 and KPB-200 exhibited anti-VACV activities.

Both KPB-100 and KPB-200 achieved profound negative per cent spread in a VACV spread inhibition assay at 16 μg/mL, as defined by GFP expression relative to the positive control, cytarabine. Additionally, KPB-100 showed a high degree of potency at nearly 100% inhibition of virus spread at 4 μg/mL. Further studies are required to establish the mechanism of action of these compounds and to determine inhibitory step(s) in the VACV life cycle.

The cytotoxicity of KPB-100 and KPB-200 was <20% cytopathic effect at 25 μg/mL as measured by CPE in plaque reduction. However, because of limited material availability, CC50 and CC100 data points have not yet been found for either compound. Near-term studies will focus on characterizing cytotoxic effects in vitro and toxic and pharmacokinetic effects in vivo.

Conclusions

Both tested compounds proved to be potent inhibitors of HHV-2 and VACV. Additionally, KPB-100 showed strong activity of acyclovir-resistant HHV-2 TK-mutant isolates and HHV-1.

The carbon structures of KPB-100 and KPB-200 are high value targets for future synthetic optimization, and KPB-100 may be directly useful as an antiviral therapeutic agent. Treatment areas of highest priority include treatment-sensitive and treatment-resistant HHV-1 and HHV-2 via topical or systemic administration, smallpox and progressive Vaccinia. Further antivirus spectrum of activity tests may yield additional indications in the future.

Acknowledgments

The authors are grateful to the Wesley T. Johnson Memorial Virus Research Fund and KP Biosciences Incorporation for financial support of this work, and Brett Hurst and Nathan Clyde for technical assistance with antiviral testing.

Disclosure statement

Authors including Matthew Cryer, Kyle Lane, Paul Rogers, and Marc Hansen have been or presently are employees of KP Biosciences Incorporation. Additional authors having a financial interest or equity stake in KP Biosciences Incorporation include Mary Greer, Rex Cates, Brent Johnson, and Merritt Andrus. The authors alone are responsible for the content and writing of this paper.

The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.

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