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Original Articles

Computing with cells: membrane systems – some complexity issues

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Pages 347-365 | Received 16 Mar 2007, Accepted 01 Jun 2007, Published online: 11 Sep 2008
 

Abstract

Membrane computing is a branch of natural computing which abstracts computing models from the structure and the functioning of the living cell. The main ingredients of membrane systems, called P systems, are (i) the membrane structure, which consists of a hierarchical arrangements of membranes which delimit compartments where (ii) multisets of symbols, called objects, evolve according to (iii) sets of rules which are localised and associated with compartments. By using the rules in a nondeterministic/deterministic maximally parallel manner, transitions between the system configurations can be obtained. A sequence of transitions is a computation of how the system is evolving. Various ways of controlling the transfer of objects from one membrane to another and applying the rules, as well as possibilities to dissolve, divide or create membranes have been studied. Membrane systems have a great potential for implementing massively concurrent systems in an efficient way that would allow us to solve currently intractable problems once future biotechnology gives way to a practical bio-realization. In this paper we survey some interesting and fundamental complexity issues such as universality vs. nonuniversality, determinism vs. nondeterminism, membrane and alphabet size hierarchies, characterizations of context-sensitive languages and other language classes and various notions of parallelism.

Acknowledgements

The research of O. H. Ibarra was supported in part by NSF Grants CCF-0430945 and CCF-0524136. The research of A. Păun was supported in part by LA BoR RSC grant LEQSF (2004–07)-RD-A-23 and NSF Grants IMR-0414903 and CCF-0523572.

Notes

Additional information

Notes on contributors

Andrei Păun

1 1 [email protected]

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